SF3B3 - splicing factor 3b subunit 3

 

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The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 11 View list of all current human gene IDs
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Cross References
UniProt: Q15393 HGNC Approved Gene Symbol: SF3B3 
Ensembl ENSG00000189091 
Synonyms : SAP130, SF3b130, RSE1, KIAA0017 Previous Names: "splicing factor 3b, subunit 3, 130kD", "splicing factor 3b, subunit 3, 130kDa"
HgncId : HGNC:10770  Omim: 605592 
Refseq: NM_012426  GenBank: AJ001443 
 
Genomic coordinates: Cytogenetic location: 16q22.1 reset view
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

SF3B3 Gene Structure

Chromosome: chr16
Genbank ID: NM_012426 Orientation: +
Length coding sequence : 3651 nucleotides.
Regionstartendregion lengthphase at end
UTR70,526,58670,526,656
Exon70,526,65770,526,726701
Exon70,528,87370,529,1993271
Exon70,530,74570,530,9171730
Exon70,532,47970,532,6201421
Exon70,535,30870,535,4201130
Exon70,538,32370,538,4601380
Exon70,539,10470,539,2071042
Exon70,541,66970,541,8341660
Exon70,544,43870,544,533960
Exon70,548,37070,548,442731
Exon70,554,44670,554,5971520
Exon70,555,05170,555,2061560
Exon70,556,17970,556,3341560
Exon70,556,88670,557,0291440
Exon70,560,46970,560,5911230
Exon70,561,63070,561,7841552
Exon70,563,87670,564,0501750
Exon70,565,06570,565,2702062
Exon70,565,36870,565,5241570
Exon70,567,41170,567,5361260
Exon70,568,28370,568,4952130
Exon70,569,04370,569,141990
Exon70,570,00670,570,1491440
Exon70,571,09570,571,1991050
Exon70,571,67370,571,8131410
UTR70,571,81470,577,668