SMN1 - survival of motor neuron 1, telomeric

 

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The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Find PDB entities (unique chains) for SMN1 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q16637 HGNC Approved Gene Symbol: SMN1 
Previous Symbols: SMA@, SMA Ensembl ENSG00000172062 
Synonyms : BCD541, SMNT, SMA1, SMA2, SMA3, GEMIN1, TDRD16A Previous Names: "spinal muscular atrophy (Werdnig-Hoffmann disease, Kugelberg-Welander disease)"
HgncId : HGNC:11117  Omim: 600354 
Refseq: NM_000344  GenBank: U18423 
 
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

SMN1 Gene Structure

Chromosome: chr5
Genbank ID: NM_000344 Orientation: +
Length coding sequence : 882 nucleotides.
Regionstartendregion lengthphase at end
UTR70,220,76770,220,930
Exon70,220,93170,221,011810
Exon70,234,66670,234,737720
Exon70,237,21670,237,3351200
Exon70,238,18570,238,3852010
Exon70,238,54570,238,6971530
Exon70,240,48570,240,580960
Exon70,241,89370,242,0031110
Exon70,247,76870,247,818510
UTR70,247,81970,247,821