SNRNP40 - small nuclear ribonucleoprotein U5 subunit 40

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 17 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q96DI7 HGNC Approved Gene Symbol: SNRNP40 
Previous Symbols: WDR57 Ensembl ENSG00000060688 
Synonyms : PRP8BP, SPF38, PRPF8BP, HPRP8BP Previous Names: "WD repeat domain 57 (U5 snRNP specific)", "small nuclear ribonucleoprotein 40kDa (U5)", "small nuclear ribonucleoprotein, U5 40kDa subunit"
HgncId : HGNC:30857  Omim: 607797 
Refseq: NM_004814  GenBank: AF090988 
 
Genomic coordinates: Cytogenetic location: 1p35.2 reset view
Currently highlighted: Genomic position: chr1:31,764,853 View in genomic position mapping tool
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

SNRNP40 Gene Structure

Chromosome: chr1
Genbank ID: NM_004814 Orientation: -
Length coding sequence : 1071 nucleotides.
Regionstartendregion lengthphase at end
UTR
31,769,59931,769,644
Exon31,769,45831,769,5981410
Exon31,766,06631,766,1951301
Exon31,764,76031,764,853942
Exon31,762,10131,762,2661660
Exon31,754,22131,754,3431230
Exon31,744,22631,744,3461211
Exon31,742,00531,742,087830
Exon31,740,71831,740,779622
Exon31,734,37631,734,4791041
Exon31,732,91931,732,968500
UTR
31,732,41531,732,918