SORT1 - sortilin 1

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Find PDB entities (unique chains) for SORT1 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q99523 HGNC Approved Gene Symbol: SORT1 
Ensembl ENSG00000134243 
Synonyms : Gp95, NT3
HgncId : HGNC:11186  Omim: 602458 
Refseq: NM_002959  GenBank: BC023542 
 
Genomic coordinates: Cytogenetic location: 1p13.3 reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

SORT1 Gene Structure

Chromosome: chr1
Genbank ID: NM_002959 Orientation: -
Length coding sequence : 2493 nucleotides.
Regionstartendregion lengthphase at end
UTR
109,397,893109,397,945
Exon109,397,587109,397,8923060
Exon109,369,530109,369,589600
Exon109,367,408109,367,481742
Exon109,355,367109,355,4691030
Exon109,354,367109,354,5311650
Exon109,350,929109,351,002742
Exon109,347,483109,347,532501
Exon109,345,751109,345,8811310
Exon109,342,014109,342,1581451
Exon109,340,724109,340,8791561
Exon109,336,240109,336,3461070
Exon109,327,499109,327,6011031
Exon109,326,992109,327,1601692
Exon109,324,899109,325,0891911
Exon109,322,932109,323,1211902
Exon109,317,853109,317,9691172
Exon109,316,850109,316,9581090
Exon109,314,672109,314,7781072
Exon109,314,261109,314,3841240
Exon109,314,043109,314,057150
UTR
109,309,566109,314,042