TET1 - tet methylcytosine dioxygenase 1

 

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The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Find PDB entities (unique chains) for TET1 View list of all current human gene IDs
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Cross References
UniProt: Q8NFU7 HGNC Approved Gene Symbol: TET1 
Previous Symbols: CXXC6 Ensembl ENSG00000138336 
Synonyms : LCX, KIAA1676, bA119F7.1 Previous Names: "CXXC zinc finger 6", "tet oncogene 1"
HgncId : HGNC:29484  Omim: 607790 
Refseq: NM_030625  GenBank: AF430147 
 
Genomic coordinates: Cytogenetic location: 10q21.3 reset view
Currently highlighted: Genomic position: chr10:70,360,738 View in genomic position mapping tool
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

TET1 Gene Structure

Chromosome: chr10
Genbank ID: NM_030625 Orientation: +
Length coding sequence : 6408 nucleotides.
Regionstartendregion lengthphase at end
UTR70,331,97370,332,095
Exon70,332,09670,334,00919140
Exon70,360,73870,360,791540
Exon70,404,45570,406,76223081
Exon70,411,60370,411,693912
Exon70,412,25870,412,351940
Exon70,426,80270,427,0132122
Exon70,432,65270,432,8021510
Exon70,441,15670,441,245900
Exon70,442,59370,442,7301380
Exon70,446,11370,446,4643521
Exon70,450,56570,451,57110070
UTR70,451,57270,454,239