VPS39 - VPS39, HOPS complex subunit

 

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The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Find PDB entities (unique chains) for VPS39 View list of all current human gene IDs
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Cross References
UniProt: Q96JC1 HGNC Approved Gene Symbol: VPS39 
Ensembl ENSG00000166887 
Synonyms : KIAA0770, VAM6 Previous Names: "vacuolar protein sorting 39 (yeast)", "vacuolar protein sorting 39 homolog (S. cerevisiae)"
HgncId : HGNC:20593  Omim: 612188 
Refseq: NM_015289  GenBank: AF280814 
 
Genomic coordinates: Cytogenetic location: 15q15.1 reset view
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

VPS39 Gene Structure

Chromosome: chr15
Genbank ID: NM_015289 Orientation: -
Length coding sequence : 2625 nucleotides.
Regionstartendregion lengthphase at end
UTR
42,500,35242,500,524
Exon42,500,27942,500,351731
Exon42,492,09442,492,159661
Exon42,483,69442,483,758650
Exon42,483,32342,483,365431
Exon42,481,31242,481,406950
Exon42,479,95642,480,054990
Exon42,479,46942,479,561930
Exon42,476,71542,476,8981841
Exon42,470,64842,470,7681212
Exon42,470,41642,470,5361210
Exon42,465,92142,466,0501301
Exon42,461,92242,462,0641430
Exon42,459,59242,459,7351440
Exon42,458,97042,459,1111421
Exon42,458,76142,458,847871
Exon42,458,35742,458,430740
Exon42,457,91642,458,014990
Exon42,457,19442,457,3111181
Exon42,456,55642,456,6841291
Exon42,455,82442,455,9261032
Exon42,455,54842,455,593460
Exon42,454,53042,454,6791500
Exon42,454,23042,454,3641350
Exon42,453,88042,453,971922
Exon42,452,95242,453,027760
UTR
42,450,89942,452,951