XRN1 - 5'-3' exoribonuclease 1

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: no matching PDB entities View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q8IZH2 HGNC Approved Gene Symbol: XRN1 
Ensembl ENSG00000114127 
Synonyms : SEP1
HgncId : HGNC:30654  Omim: 607994 
Refseq: NM_019001  GenBank: AY137776 
 
Genomic coordinates: Cytogenetic location: 3q23 reset view
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

XRN1 Gene Structure

Chromosome: chr3
Genbank ID: NM_019001 Orientation: -
Length coding sequence : 5118 nucleotides.
Regionstartendregion lengthphase at end
UTR
142,166,787142,166,904
Exon142,166,712142,166,786750
Exon142,151,503142,151,7352332
Exon142,145,586142,145,683981
Exon142,144,271142,144,3801100
Exon142,144,064142,144,1741110
Exon142,142,402142,142,484832
Exon142,141,677142,141,764880
Exon142,141,424142,141,5921691
Exon142,140,318142,140,385680
Exon142,139,858142,139,9951380
Exon142,137,657142,137,723671
Exon142,137,346142,137,4511062
Exon142,135,982142,136,071902
Exon142,132,977142,133,1331570
Exon142,131,386142,131,5051200
Exon142,123,749142,123,9181702
Exon142,122,711142,122,8311210
Exon142,122,516142,122,614990
Exon142,119,286142,119,3891042
Exon142,116,171142,116,3021322
Exon142,103,365142,103,5271630
Exon142,102,142142,102,2551140
Exon142,098,924142,099,022990
Exon142,095,321142,095,4361162
Exon142,094,640142,094,7861472
Exon142,090,081142,090,170902
Exon142,089,327142,089,4621360
Exon142,084,152142,084,208570
Exon142,083,889142,084,0211331
Exon142,078,704142,078,773702
Exon142,075,754142,075,9612080
Exon142,074,243142,074,338960
Exon142,066,076142,066,1841091
Exon142,054,290142,054,351620
Exon142,051,809142,051,9311230
Exon142,051,217142,051,3731571
Exon142,048,276142,048,4571820
Exon142,037,632142,037,7451140
Exon142,037,434142,037,5361031
Exon142,031,978142,032,016391
Exon142,031,440142,031,6001610
Exon142,030,353142,030,6553030
UTR
142,025,449142,030,352