5IED
Murine endoplasmic reticulum alpha-glucosidase II with castanospermine
- PDB DOI: https://doi.org/10.2210/pdb5IED/pdb
- Classification: HYDROLASE
- Organism(s): Mus musculus
- Expression System: Homo sapiens
- Mutation(s): No 
- Deposited: 2016-02-25 Released: 2016-07-27 
- Funding Organization(s): Wellcome Trust
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.81 Å
- R-Value Free: 0.184 
- R-Value Work: 0.159 
- R-Value Observed: 0.160 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Neutral alpha-glucosidase AB | 934 | Mus musculus | Mutation(s): 0  Gene Names: Ganab, G2an, Kiaa0088 EC: 3.2.1.84 | ||
UniProt | |||||
Find proteins for Q8BHN3 (Mus musculus) Explore Q8BHN3  Go to UniProtKB:  Q8BHN3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8BHN3 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Glucosidase 2 subunit beta | 88 | Mus musculus | Mutation(s): 0  Gene Names: Prkcsh | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O08795 (Mus musculus) Explore O08795  Go to UniProtKB:  O08795 | |||||
IMPC:  MGI:107877 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O08795 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 6 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
P6G Query on P6G | DA [auth B], G [auth A], H [auth A], I [auth A] | HEXAETHYLENE GLYCOL C12 H26 O7 IIRDTKBZINWQAW-UHFFFAOYSA-N | |||
PG4 Query on PG4 | CA [auth B], D [auth A], E [auth A], F [auth A] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N | |||
CTS Query on CTS | Z [auth A] | CASTANOSPERMINE C8 H15 N O4 JDVVGAQPNNXQDW-TVNFTVLESA-N | |||
EDO Query on EDO | EA [auth B] J [auth A] K [auth A] L [auth A] M [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
FMT Query on FMT | FA [auth B] O [auth A] P [auth A] Q [auth A] R [auth A] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N | |||
CA Query on CA | AA [auth B], BA [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.81 Å
- R-Value Free: 0.184 
- R-Value Work: 0.159 
- R-Value Observed: 0.160 
- Space Group: P 21 21 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 103.43 | α = 90 |
b = 173.9 | β = 90 |
c = 63.04 | γ = 90 |
Software Name | Purpose |
---|---|
BUSTER | refinement |
autoPROC | data reduction |
Aimless | data scaling |
BUSTER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2016-07-27  Deposition Author(s): Caputo, A.T., Roversi, P., Alonzi, D.S., Kiappes, J.L., Zitzmann, N.
Funding Organization | Location | Grant Number |
---|---|---|
Wellcome Trust | United Kingdom | 097300/Z/11/Z |
Revision History (Full details and data files)
- Version 1.0: 2016-07-27
Type: Initial release - Version 1.1: 2016-08-03
Changes: Database references - Version 1.2: 2016-08-24
Changes: Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Refinement description, Structure summary - Version 2.1: 2024-01-10
Changes: Data collection, Database references, Refinement description, Structure summary