6IHT

Crystal structure of bacterial serine phosphatase bound with phosphorylated peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.569 Å
  • R-Value Free: 0.183 
  • R-Value Work: 0.159 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of bacterial serine phosphatase

Yang, C.-G.Yang, T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Phosphorylated protein phosphatase
A
266Staphylococcus aureusMutation(s): 0 
Gene Names: prpC_1 (prpC)
EC: 3.1.3.16
Find proteins for Q9RL81 (Staphylococcus aureus)
Go to UniProtKB:  Q9RL81
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
His12
X
3N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MN
Query on MN

Download SDF File 
Download CCD File 
A
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
SEP
Query on SEP
X
L-PEPTIDE LINKINGC3 H8 N O6 PSER
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.569 Å
  • R-Value Free: 0.183 
  • R-Value Work: 0.159 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 46.693α = 90.00
b = 38.609β = 101.89
c = 65.003γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
HKL-3000data scaling
HKL-3000data reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-10-02 
  • Released Date: 2019-08-07 
  • Deposition Author(s): Yang, C.-G., yang, T.

Revision History 

  • Version 1.0: 2019-08-07
    Type: Initial release