6ISU

Crystal structure of Lys27-linked di-ubiquitin in complex with its selective interacting protein UCHL3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.866 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.209 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Chemical Protein Synthesis-Enabled Mechanistic Studies on the Molecular Recognition of K27-linked Ubiquitin Chains.

Pan, M.Zheng, Q.Ding, S.Zhang, L.Qu, Q.Wang, T.Hong, D.Ren, Y.Liang, L.Chen, C.Mei, Z.Liu, L.

(2018) Angew. Chem. Int. Ed. Engl. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin carboxyl-terminal hydrolase isozyme L3
A
230Homo sapiensMutation(s): 0 
Gene Names: UCHL3
EC: 3.4.19.12
Find proteins for P15374 (Homo sapiens)
Go to Gene View: UCHL3
Go to UniProtKB:  P15374
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin
B
76Homo sapiensMutation(s): 0 
Gene Names: UBB
Find proteins for P0CG47 (Homo sapiens)
Go to Gene View: UBB
Go to UniProtKB:  P0CG47
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin
C
76Homo sapiensMutation(s): 0 
Gene Names: UBB
Find proteins for P0CG47 (Homo sapiens)
Go to Gene View: UBB
Go to UniProtKB:  P0CG47
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
SLZ
Query on SLZ
C
L-PEPTIDE LINKINGC5 H12 N2 O2 SLYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.866 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.209 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 91.407α = 90.00
b = 94.204β = 90.00
c = 91.178γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina21532004
National Natural Science Foundation of ChinaChina91753205
National Natural Science Foundation of ChinaChina31640016

Revision History 

  • Version 1.0: 2019-02-06
    Type: Initial release