6KLX

Pore structure of Iota toxin binding component (Ib)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.9 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Translocational unfolding in clostridial binary iota toxin complex

Yamada, T.Yoshida, T.Kawamoto, A.Mitsuoka, K.Iwasaki, K.Tsuge, H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Iota toxin component Ib
A, B, C, D, E, F, G
666Clostridium perfringensMutation(s): 0 
Find proteins for Q46221 (Clostridium perfringens)
Go to UniProtKB:  Q46221
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.9 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of ScienceJapan18K06170
Japan Society for the Promotion of ScienceJapan17K15095

Revision History 

  • Version 1.0: 2020-01-15
    Type: Initial release