6Y5W

Crystal structure of the envelope glycoprotein complex of Andes virus in a near postfusion conformation

• PDB DOI: https://doi.org/10.2210/pdb6Y5W/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Orthohantavirus andesense
• Expression System: Drosophila melanogaster
• Mutation(s): No 


• Deposited: 2020-02-26 Released: 2020-10-14 
• Deposition Author(s): Serris, A., Rey, F.A., Guardado-Calvo, P.
• Funding Organization(s): French National Research Agency

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.55 Å
• R-Value Free: 0.261 
• R-Value Work: 0.216 
• R-Value Observed: 0.218 

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: microscopy

Macromolecule Content

• Total Structure Weight: 195.65 kDa 
• Atom Count: 5,984 
• Modelled Residue Count: 754 
• Deposited Residue Count: 1,784 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Envelope polyprotein,Envelope polyprotein	A, B	892	Orthohantavirus andesense	Mutation(s): 0  Gene Names: M, ADT63_73450gpM, ADT63_73451gpM, ADT63_73452gpM, ADT63_74519gpM, ADT63_74520gpM
UniProt
Find proteins for Q9E006 (Andes orthohantavirus) Explore Q9E006  Go to UniProtKB:  Q9E006

Oligosaccharides

Help

Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	C	4		N-Glycosylation
Glycosylation Resources
GlyTouCan:  G81315DD GlyCosmos:  G81315DD GlyGen:  G81315DD

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	D, E	4		N-Glycosylation
Glycosylation Resources
GlyTouCan:  G22573RC GlyCosmos:  G22573RC GlyGen:  G22573RC

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.55 Å
• R-Value Free: 0.261 
• R-Value Work: 0.216 
• R-Value Observed: 0.218 
• Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 130.33	α = 90
b = 130.33	β = 90
c = 129.501	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2020-10-14 
Deposition Author(s): Serris, A., Rey, F.A., Guardado-Calvo, P.

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Funding Organization	Location	Grant Number
French National Research Agency	France	ANR-18-CE11-0011

Revision History  

• Version 1.0: 2020-10-14
  Type: Initial release
  
• Version 1.1: 2020-10-28
  Changes: Database references
• Version 1.2: 2024-01-24
  Changes: Data collection, Database references, Refinement description