6ZON

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis for translational shutdown and immune evasion by the Nsp1 protein of SARS-CoV-2.

Thoms, M.Buschauer, R.Ameismeier, M.Koepke, L.Denk, T.Hirschenberger, M.Kratzat, H.Hayn, M.Mackens-Kiani, T.Cheng, J.Straub, J.H.Sturzel, C.M.Frohlich, T.Berninghausen, O.Becker, T.Kirchhoff, F.Sparrer, K.M.J.Beckmann, R.

(2020) Science 369: 1249-1255

  • DOI: 10.1126/science.abc8665
  • Primary Citation of Related Structures:  
    6ZME, 6ZLW, 6ZM7, 6ZMT, 6ZN5, 6ZMI, 6ZMO, 6ZP4, 6ZON

  • PubMed Abstract: 
  • SARS-CoV-2 is the causative agent of the current COVID-19 pandemic. A major virulence factor of SARS-CoVs is the nonstructural protein 1 (Nsp1) which suppresses host gene expression by ribosome association. Here, we show that Nsp1 from SARS-CoV-2 bin ...

    SARS-CoV-2 is the causative agent of the current COVID-19 pandemic. A major virulence factor of SARS-CoVs is the nonstructural protein 1 (Nsp1) which suppresses host gene expression by ribosome association. Here, we show that Nsp1 from SARS-CoV-2 binds to the 40S ribosomal subunit, resulting in shutdown of mRNA translation both in vitro and in cells. Structural analysis by cryo-electron microscopy (cryo-EM) of in vitro reconstituted Nsp1-40S and various native Nsp1-40S and -80S complexes revealed that the Nsp1 C terminus binds to and obstructs the mRNA entry tunnel. Thereby, Nsp1 effectively blocks RIG-I-dependent innate immune responses that would otherwise facilitate clearance of the infection. Thus, the structural characterization of the inhibitory mechanism of Nsp1 may aid structure-based drug design against SARS-CoV-2.


    Organizational Affiliation

    Gene Center Munich, Department of Biochemistry, University of Munich, Munich, Germany. beckmann@genzentrum.lmu.de konstantin.sparrer@uni-ulm.de.



Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein SAa295Homo sapiensMutation(s): 0 
Gene Names: RPSALAMBRLAMR1
Find proteins for P08865 (Homo sapiens)
Explore P08865 
Go to UniProtKB:  P08865
NIH Common Fund Data Resources
PHAROS  P08865
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S2d293Homo sapiensMutation(s): 0 
Gene Names: RPS2RPS4
Find proteins for P15880 (Homo sapiens)
Explore P15880 
Go to UniProtKB:  P15880
NIH Common Fund Data Resources
PHAROS  P15880
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S26Q115Homo sapiensMutation(s): 0 
Gene Names: RPS26
Find proteins for P62854 (Homo sapiens)
Explore P62854 
Go to UniProtKB:  P62854
NIH Common Fund Data Resources
PHAROS  P62854
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L41W25Homo sapiensMutation(s): 0 
Gene Names: RPL41
Find proteins for P62945 (Homo sapiens)
Explore P62945 
Go to UniProtKB:  P62945
NIH Common Fund Data Resources
PHAROS  P62945
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S6r249Homo sapiensMutation(s): 0 
Gene Names: RPS6OK/SW-cl.2
Find proteins for P62753 (Homo sapiens)
Explore P62753 
Go to UniProtKB:  P62753
NIH Common Fund Data Resources
PHAROS  P62753
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S9c194Homo sapiensMutation(s): 0 
Gene Names: RPS9
Find proteins for P46781 (Homo sapiens)
Explore P46781 
Go to UniProtKB:  P46781
NIH Common Fund Data Resources
PHAROS  P46781
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S21y83Homo sapiensMutation(s): 0 
Gene Names: RPS21
Find proteins for P63220 (Homo sapiens)
Explore P63220 
Go to UniProtKB:  P63220
NIH Common Fund Data Resources
PHAROS  P63220
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S15af130Homo sapiensMutation(s): 0 
Gene Names: RPS15AOK/SW-cl.82
Find proteins for P62244 (Homo sapiens)
Explore P62244 
Go to UniProtKB:  P62244
NIH Common Fund Data Resources
PHAROS  P62244
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S23j143Homo sapiensMutation(s): 0 
Gene Names: RPS23
Find proteins for P62266 (Homo sapiens)
Explore P62266 
Go to UniProtKB:  P62266
NIH Common Fund Data Resources
PHAROS  P62266
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S24z133Homo sapiensMutation(s): 0 
Gene Names: RPS24
Find proteins for P62847 (Homo sapiens)
Explore P62847 
Go to UniProtKB:  P62847
NIH Common Fund Data Resources
PHAROS  P62847
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S27R84Homo sapiensMutation(s): 0 
Gene Names: RPS27MPS1
Find proteins for P42677 (Homo sapiens)
Explore P42677 
Go to UniProtKB:  P42677
NIH Common Fund Data Resources
PHAROS  P42677
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S30T59Homo sapiensMutation(s): 0 
Gene Names: FAU
Find proteins for P62861 (Homo sapiens)
Explore P62861 
Go to UniProtKB:  P62861
NIH Common Fund Data Resources
PHAROS  P62861
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S17w135Homo sapiensMutation(s): 0 
Gene Names: RPS17RPS17L
Find proteins for P08708 (Homo sapiens)
Explore P08708 
Go to UniProtKB:  P08708
NIH Common Fund Data Resources
PHAROS  P08708
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S16g146Homo sapiensMutation(s): 0 
Gene Names: RPS16
Find proteins for P62249 (Homo sapiens)
Explore P62249 
Go to UniProtKB:  P62249
NIH Common Fund Data Resources
PHAROS  P62249
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S3b243Homo sapiensMutation(s): 0 
Gene Names: RPS3OK/SW-cl.26
EC: 4.2.99.18
Find proteins for P23396 (Homo sapiens)
Explore P23396 
Go to UniProtKB:  P23396
NIH Common Fund Data Resources
PHAROS  P23396
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S5e204Homo sapiensMutation(s): 0 
Gene Names: RPS5
Find proteins for P46782 (Homo sapiens)
Explore P46782 
Go to UniProtKB:  P46782
NIH Common Fund Data Resources
PHAROS  P46782
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S10u165Homo sapiensMutation(s): 0 
Gene Names: RPS10
Find proteins for P46783 (Homo sapiens)
Explore P46783 
Go to UniProtKB:  P46783
NIH Common Fund Data Resources
PHAROS  P46783
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S12v132Homo sapiensMutation(s): 0 
Gene Names: RPS12
Find proteins for P25398 (Homo sapiens)
Explore P25398 
Go to UniProtKB:  P25398
NIH Common Fund Data Resources
PHAROS  P25398
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S15o145Homo sapiensMutation(s): 0 
Gene Names: RPS15RIG
Find proteins for P62841 (Homo sapiens)
Explore P62841 
Go to UniProtKB:  P62841
NIH Common Fund Data Resources
PHAROS  P62841
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S18k152Homo sapiensMutation(s): 0 
Gene Names: RPS18D6S218E
Find proteins for P62269 (Homo sapiens)
Explore P62269 
Go to UniProtKB:  P62269
NIH Common Fund Data Resources
PHAROS  P62269
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S20h119Homo sapiensMutation(s): 0 
Gene Names: RPS20
Find proteins for P60866 (Homo sapiens)
Explore P60866 
Go to UniProtKB:  P60866
NIH Common Fund Data Resources
PHAROS  P60866
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S25P125Homo sapiensMutation(s): 0 
Gene Names: RPS25
Find proteins for P62851 (Homo sapiens)
Explore P62851 
Go to UniProtKB:  P62851
NIH Common Fund Data Resources
PHAROS  P62851
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S28S69Homo sapiensMutation(s): 0 
Gene Names: RPS28
Find proteins for P62857 (Homo sapiens)
Explore P62857 
Go to UniProtKB:  P62857
NIH Common Fund Data Resources
PHAROS  P62857
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S29l56Homo sapiensMutation(s): 0 
Gene Names: RPS29
Find proteins for P62273 (Homo sapiens)
Explore P62273 
Go to UniProtKB:  P62273
NIH Common Fund Data Resources
PHAROS  P62273
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetailsImage
Ubiquitin-40S ribosomal protein S27aU156Homo sapiensMutation(s): 0 
Gene Names: RPS27AUBA80UBCEP1
Find proteins for P62979 (Homo sapiens)
Explore P62979 
Go to UniProtKB:  P62979
NIH Common Fund Data Resources
PHAROS  P62979
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetailsImage
Receptor of activated protein C kinase 1V317Homo sapiensMutation(s): 0 
Gene Names: RACK1GNB2L1HLC7PIG21
Find proteins for P63244 (Homo sapiens)
Explore P63244 
Go to UniProtKB:  P63244
NIH Common Fund Data Resources
PHAROS  P63244
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit CC913Homo sapiensMutation(s): 0 
Gene Names: EIF3CEIF3S8
Find proteins for Q99613 (Homo sapiens)
Explore Q99613 
Go to UniProtKB:  Q99613
NIH Common Fund Data Resources
PHAROS  Q99613
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit EE445Homo sapiensMutation(s): 0 
Gene Names: EIF3EEIF3S6INT6
Find proteins for P60228 (Homo sapiens)
Explore P60228 
Go to UniProtKB:  P60228
NIH Common Fund Data Resources
PHAROS  P60228
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit HH352Homo sapiensMutation(s): 0 
Gene Names: EIF3HEIF3S3
Find proteins for O15372 (Homo sapiens)
Explore O15372 
Go to UniProtKB:  O15372
NIH Common Fund Data Resources
PHAROS  O15372
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit LL564Homo sapiensMutation(s): 0 
Gene Names: EIF3LEIF3EIPEIF3S6IPHSPC021HSPC025MSTP005
Find proteins for Q9Y262 (Homo sapiens)
Explore Q9Y262 
Go to UniProtKB:  Q9Y262
NIH Common Fund Data Resources
PHAROS  Q9Y262
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit MM374Homo sapiensMutation(s): 0 
Gene Names: EIF3MHFLB5PCID1GA17PNAS-125
Find proteins for Q7L2H7 (Homo sapiens)
Explore Q7L2H7 
Go to UniProtKB:  Q7L2H7
NIH Common Fund Data Resources
PHAROS  Q7L2H7
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 46
MoleculeChainsSequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit DD548Homo sapiensMutation(s): 0 
Gene Names: EIF3DEIF3S7
Find proteins for O15371 (Homo sapiens)
Explore O15371 
Go to UniProtKB:  O15371
NIH Common Fund Data Resources
PHAROS  O15371
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 47
MoleculeChainsSequence LengthOrganismDetailsImage
Unknown factorY78Homo sapiensMutation(s): 0 
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetailsImage
Host translation inhibitor Nsp1J180Severe acute respiratory syndrome coronavirus 2Mutation(s): 0 
Gene Names: rep1a-1b
EC: 3.4.19.12 (PDB Primary Data), 3.4.22 (PDB Primary Data), 3.4.22.69 (PDB Primary Data), 2.7.7.48 (PDB Primary Data), 3.6.4.12 (PDB Primary Data), 3.6.4.13 (PDB Primary Data), 3.1.13 (PDB Primary Data), 3.1 (PDB Primary Data), 2.1.1 (PDB Primary Data)
Find proteins for P0DTD1 (Severe acute respiratory syndrome coronavirus 2)
Explore P0DTD1 
Go to UniProtKB:  P0DTD1
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S11n158Homo sapiensMutation(s): 0 
Gene Names: RPS11
Find proteins for P62280 (Homo sapiens)
Explore P62280 
Go to UniProtKB:  P62280
NIH Common Fund Data Resources
PHAROS  P62280
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S13m151Homo sapiensMutation(s): 0 
Gene Names: RPS13
Find proteins for P62277 (Homo sapiens)
Explore P62277 
Go to UniProtKB:  P62277
NIH Common Fund Data Resources
PHAROS  P62277
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S14i151Homo sapiensMutation(s): 0 
Gene Names: RPS14PRO2640
Find proteins for P62263 (Homo sapiens)
Explore P62263 
Go to UniProtKB:  P62263
NIH Common Fund Data Resources
PHAROS  P62263
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S3ap264Homo sapiensMutation(s): 0 
Gene Names: RPS3AFTE1MFTL
Find proteins for P61247 (Homo sapiens)
Explore P61247 
Go to UniProtKB:  P61247
NIH Common Fund Data Resources
PHAROS  P61247
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S19x145Homo sapiensMutation(s): 0 
Gene Names: RPS19
Find proteins for P39019 (Homo sapiens)
Explore P39019 
Go to UniProtKB:  P39019
NIH Common Fund Data Resources
PHAROS  P39019
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit II325Homo sapiensMutation(s): 0 
Gene Names: EIF3IEIF3S2TRIP1
Find proteins for Q13347 (Homo sapiens)
Explore Q13347 
Go to UniProtKB:  Q13347
NIH Common Fund Data Resources
PHAROS  Q13347
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit BB814Homo sapiensMutation(s): 0 
Gene Names: EIF3BEIF3S9
Find proteins for P55884 (Homo sapiens)
Explore P55884 
Go to UniProtKB:  P55884
NIH Common Fund Data Resources
PHAROS  P55884
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 38
MoleculeChainsSequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit A,Eukaryotic translation initiation factor 3 subunit AA703Homo sapiensMutation(s): 0 
Gene Names: EIF3A
Find proteins for Q14152 (Homo sapiens)
Explore Q14152 
Go to UniProtKB:  Q14152
NIH Common Fund Data Resources
PHAROS  Q14152
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit FF357Homo sapiensMutation(s): 0 
Gene Names: EIF3FEIF3S5
EC: 3.4.19.12
Find proteins for O00303 (Homo sapiens)
Explore O00303 
Go to UniProtKB:  O00303
NIH Common Fund Data Resources
PHAROS  O00303
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit KK218Homo sapiensMutation(s): 0 
Gene Names: EIF3KEIF3S12ARG134HSPC029MSTP001PTD001
Find proteins for Q9UBQ5 (Homo sapiens)
Explore Q9UBQ5 
Go to UniProtKB:  Q9UBQ5
NIH Common Fund Data Resources
PHAROS  Q9UBQ5
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S4, X isoformq263Homo sapiensMutation(s): 0 
Gene Names: RPS4XCCG2RPS4SCAR
Find proteins for P62701 (Homo sapiens)
Explore P62701 
Go to UniProtKB:  P62701
NIH Common Fund Data Resources
PHAROS  P62701
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S7s194Homo sapiensMutation(s): 0 
Gene Names: RPS7
Find proteins for P62081 (Homo sapiens)
Explore P62081 
Go to UniProtKB:  P62081
NIH Common Fund Data Resources
PHAROS  P62081
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S8t208Homo sapiensMutation(s): 0 
Gene Names: RPS8OK/SW-cl.83
Find proteins for P62241 (Homo sapiens)
Explore P62241 
Go to UniProtKB:  P62241
NIH Common Fund Data Resources
PHAROS  P62241
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  Structure
Entity ID: 20
MoleculeChainsLengthOrganismImage
18S ribosomal RNA21868Homo sapiens
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download CCD File 
Q, U, l
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanySFB/TRR-174
German Research Foundation (DFG)GermanyBE1814/15-1
German Research Foundation (DFG)GermanyBE1814/1-1

Revision History 

  • Version 1.0: 2020-07-29
    Type: Initial release
  • Version 1.1: 2020-09-16
    Changes: Database references