4V4I

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth D]SCOP2B SuperfamilyRibosomal protein L48033198 3001146 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyRibosomal protein L68033202 3000724 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyRibosomal protein L68033203 3000724 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyRibosomal protein L9 C-domain8042934 3000329 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyL9 N-domain-like8042935 3000338 SCOP2B (2022-06-29)
K [auth I]SCOP2B Superfamily50S Ribosomal protein L14-like8042936 3000433 SCOP2B (2022-06-29)
N [auth L]SCOP2B SuperfamilyProkaryotic ribosomal protein L178032744 3000995 SCOP2B (2022-06-29)
O [auth M]SCOP2 FamilyRibosomal protein L18p and S118074013 4000555 SCOP2 (2022-06-29)
O [auth M]SCOP2 SuperfamilyTranslational machinery components8074014 3000571 SCOP2 (2022-06-29)
O [auth M]SCOP2B SuperfamilyTranslational machinery components8033211 3000571 SCOP2B (2022-06-29)
P [auth N]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8033214 3000334 SCOP2B (2022-06-29)
T [auth R]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8033219 3000210 SCOP2B (2022-06-29)
U [auth S]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8033223 3000334 SCOP2B (2022-06-29)
Y [auth W]SCOP2B SuperfamilyRibosomal protein L29 (L29p)8042933 3000713 SCOP2B (2022-06-29)
CA [auth a]SCOP2B SuperfamilyL35p-like8033192 3000790 SCOP2B (2022-06-29)
IA [auth c]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8044010 3001397 SCOP2B (2022-06-29)
JA [auth d]SCOP2B SuperfamilyProkaryotic type KH domain (KH-domain type II)8044011 3001043 SCOP2B (2022-06-29)
JA [auth d]SCOP2B SuperfamilyRibosomal protein S3 C-terminal domain8044012 3001053 SCOP2B (2022-06-29)
LA [auth f]SCOP2B SuperfamilydsRNA-binding domain-like8044017 3000985 SCOP2B (2022-06-29)
LA [auth f]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8044015 3000100 SCOP2B (2022-06-29)
PA [auth j]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8037678 3000100 SCOP2B (2022-06-29)
QA [auth k]SCOP2B SuperfamilyRibosomal protein S108044019 3001336 SCOP2B (2022-06-29)
SA [auth m]SCOP2B SuperfamilyNucleic acid-binding proteins8044021 3000135 SCOP2B (2022-06-29)
XA [auth r]SCOP2B SuperfamilyNucleic acid-binding proteins8044026 3000135 SCOP2B (2022-06-29)
YA [auth s]SCOP2B SuperfamilyRibosomal protein S188044028 3001191 SCOP2B (2022-06-29)
J [auth H]SCOP2B SuperfamilyRibosomal protein L138033205 3001134 SCOP2B (2022-06-29)
L [auth J]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8033207 3001045 SCOP2B (2022-06-29)
M [auth K]SCOP2B SuperfamilyRibosomal protein L16p/L10e8043627 3000884 SCOP2B (2022-06-29)
Q [auth O]SCOP2B SuperfamilyRibosomal protein L208033216 3000563 SCOP2B (2022-06-29)
R [auth P]SCOP2B Superfamilyl21p-like8033218 3002005 SCOP2B (2022-06-29)
S [auth Q]SCOP2B SuperfamilyRibosomal protein L228033220 3001078 SCOP2B (2022-06-29)
W [auth U]SCOP2B SuperfamilyRibosomal L27 protein-like8041210 3000539 SCOP2B (2022-06-29)
X [auth V]SCOP2B SuperfamilyL28p-like8042932 3001966 SCOP2B (2022-06-29)
AA [auth Y]SCOP2B SuperfamilyZn-binding ribosomal proteins8033190 3001320 SCOP2B (2022-06-29)
KA [auth e]SCOP2B SuperfamilyAlpha-L RNA-binding motif8044014 3001473 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8033194 3000334 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyNucleic acid-binding proteins8033195 3000135 SCOP2B (2022-06-29)
NA [auth h]SCOP2B SuperfamilyRibosomal protein S78033523 3000799 SCOP2B (2022-06-29)
RA [auth l]SCOP2B SuperfamilyTranslational machinery components8044020 3000571 SCOP2B (2022-06-29)
TA [auth n]SCOP2B SuperfamilyS13-like H2TH domain8003708 3000053 SCOP2B (2022-06-29)
UA [auth o]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052585 3000068 SCOP2B (2022-06-29)
WA [auth q]SCOP2B SuperfamilyRibosomal protein S168044025 3000680 SCOP2B (2022-06-29)
E [auth C]SCOP2 FamilyRibosomal protein L38089139 4002103 SCOP2 (2022-06-29)
E [auth C]SCOP2 SuperfamilyTranslational proteins8089140 3000811 SCOP2 (2022-06-29)
E [auth C]SCOP2B SuperfamilyTranslational proteins8033197 3000811 SCOP2B (2022-06-29)
ZA [auth t]SCOP2B SuperfamilyRibosomal protein S198044027 3000686 SCOP2B (2022-06-29)
AB [auth u]SCOP2B SuperfamilyRibosomal protein S208044029 3001362 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
F [auth D]PF00573e4v4iD1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
G [auth E]PF00281,PF00673e4v4iE1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
H [auth F]PF00347e4v4iF1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
I [auth G]PF01281e4v4iG2 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: PF01281ECOD (1.6)
I [auth G]PF03948e4v4iG1 A: a+b two layersX: Ribosomal protein L9 C-domain (From Topology)H: Ribosomal protein L9 C-domain (From Topology)T: Ribosomal protein L9 C-domainF: PF03948ECOD (1.6)
K [auth I]PF00238e4v4iI1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
N [auth L]PF01196e4v4iL1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
O [auth M]PF00861e4v4iM1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
P [auth N]PF01245e4v4iN1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
T [auth R]PF00276e4v4iR1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
U [auth S]PF00467,PF17136e4v4iS1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
Y [auth W]PF00831e4v4iW1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
CA [auth a]PF01632e4v4ia1 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: PF01632ECOD (1.6)
IA [auth c]PF00318e4v4ic1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
JA [auth d]PF00189e4v4id1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
JA [auth d]PF07650e4v4id2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
LA [auth f]PF03719e4v4if1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
LA [auth f]PF00333e4v4if2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
PA [auth j]PF00380e4v4ij1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
QA [auth k]PF00338e4v4ik1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
SA [auth m]PF00164e4v4im1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
XA [auth r]PF00366e4v4ir1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366ECOD (1.6)
YA [auth s]PF01084e4v4is1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
J [auth H]PF00572e4v4iH1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
L [auth J]PF00828e4v4iJ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
M [auth K]PF00252e4v4iK1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
Q [auth O]PF00453e4v4iO1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
R [auth P]PF00829e4v4iP1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
S [auth Q]PF00237e4v4iQ1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
V [auth T]PF01386e4v4iT2 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01386ECOD (1.6)
V [auth T]PF14693e4v4iT1 A: a+b complex topologyX: Ribosomal protein TL5/L25 C-terminal domain-likeH: Ribosomal protein TL5/L25 C-terminal domain-related (From Topology)T: Ribosomal protein TL5/L25 C-terminal domain-relatedF: PF14693ECOD (1.6)
W [auth U]PF01016e4v4iU1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
X [auth V]F_UNCLASSIFIEDe4v4iV1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: F_UNCLASSIFIEDECOD (1.6)
Z [auth X]PF00327e4v4iX1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
AA [auth Y]PF01783e4v4iY1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
BA [auth Z]PF00468e4v4iZ1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
C [auth A]PF00687e4v4iA1 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: PF00687ECOD (1.6)
DA [auth b]PF00444e4v4ib1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)
KA [auth e]PF00163,PF01479e4v4ie1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
MA [auth g]PF01250e4v4ig1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
D [auth B]PF00181e4v4iB2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
D [auth B]PF03947e4v4iB1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
NA [auth h]PF00177e4v4ih1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
OA [auth i]PF00410e4v4ii1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
OA [auth i]PF00410e4v4ii2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
RA [auth l]PF00411e4v4il1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
TA [auth n]PF00416e4v4in1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
UA [auth o]PF00253e4v4io1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
VA [auth p]PF00312e4v4ip1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
WA [auth q]PF00886e4v4iq1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: PF00886ECOD (1.6)
E [auth C]PF00297e4v4iC1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
ZA [auth t]PF00203e4v4it1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
AB [auth u]PF01649e4v4iu1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: PF01649ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F [auth D]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
G [auth E]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
G [auth E]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
H [auth F]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
I [auth G]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
I [auth G]PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domain- Domain
K [auth I]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
N [auth L]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
O [auth M]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
P [auth N]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
T [auth R]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
U [auth S]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
U [auth S]PF00467KOW motif (KOW)KOW motif- Family
Y [auth W]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
CA [auth a]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
IA [auth c]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
JA [auth d]PF07650KH domain (KH_2)KH domain- Domain
JA [auth d]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
LA [auth f]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
LA [auth f]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
PA [auth j]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
QA [auth k]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
SA [auth m]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
XA [auth r]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
YA [auth s]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
J [auth H]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
L [auth J]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
M [auth K]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
Q [auth O]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
R [auth P]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
S [auth Q]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
V [auth T]PF14693Ribosomal protein TL5, C-terminal domain (Ribosomal_TL5_C)Ribosomal protein TL5, C-terminal domainThis family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC pr ...This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC proteins. TL5 or CTC are not found in Eukarya or Archaea. In some Bacteria, including E. coli, this ribosomal subunit occurs as a single domain protein (named Ribosomal subunit L25), where the only domain is homologous to TL5 N-terminal domain (hence included in family Pfam:PF01386). The function of the C-terminal domain of TLC is at present unknown.
Domain
V [auth T]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
W [auth U]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
X [auth V]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
Z [auth X]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
AA [auth Y]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
BA [auth Z]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
C [auth A]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
DA [auth b]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
KA [auth e]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
KA [auth e]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
MA [auth g]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
D [auth B]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
D [auth B]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
NA [auth h]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
OA [auth i]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
RA [auth l]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
TA [auth n]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
UA [auth o]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
VA [auth p]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
WA [auth q]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
E [auth C]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
ZA [auth t]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
AB [auth u]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
BB [auth v]PF1707030S ribosomal protein Thx (Thx)30S ribosomal protein Thx- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F [auth D]50S ribosomal protein L4
G [auth E]50S ribosomal protein L5
H [auth F]50S ribosomal protein L6
I [auth G]50S ribosomal protein L9
K [auth I]50S ribosomal protein L14
N [auth L]50S ribosomal protein L17
O [auth M]50S ribosomal protein L18
P [auth N]50S ribosomal protein L19
T [auth R]50S ribosomal protein L23
U [auth S]50S ribosomal protein L24
Y [auth W]50S ribosomal protein L29
CA [auth a]50S ribosomal protein L35
EA [auth y]16S SMALL SUBUNIT RIBOSOMAL RNA---
HA [auth 1]MRNA---
IA [auth c]30S ribosomal protein S2
JA [auth d]30S ribosomal protein S3
LA [auth f]30S ribosomal protein S5
PA [auth j]30S ribosomal protein S9
QA [auth k]30S ribosomal protein S10
SA [auth m]30S ribosomal protein S12
XA [auth r]30S ribosomal protein S17
YA [auth s]30S ribosomal protein S18
A [auth w]23S LARGE SUBUNIT RIBOSOMAL RNA---
J [auth H]50S ribosomal protein L13
L [auth J]50S ribosomal protein L15
M [auth K]50S ribosomal protein L16
Q [auth O]50S ribosomal protein L20
R [auth P]50S ribosomal protein L21
S [auth Q]50S ribosomal protein L22
B [auth x]5S LARGE SUBUNIT RIBOSOMAL RNA---
V [auth T]50S ribosomal protein L25
W [auth U]50S ribosomal protein L27
X [auth V]50S ribosomal protein L28
Z [auth X]50S ribosomal protein L30
AA [auth Y]50S ribosomal protein L32
BA [auth Z]50S ribosomal protein L34
C [auth A]50S ribosomal protein L1
DA [auth b]50S ribosomal protein L36
FA [auth z]P-site PHE-tRNA---
GA [auth 0]E-TRNA---
KA [auth e]30S ribosomal protein S4
MA [auth g]30S ribosomal protein S6
D [auth B]50S ribosomal protein L2
NA [auth h]30S ribosomal protein S7
OA [auth i]30S ribosomal protein S8
RA [auth l]30S ribosomal protein S11
TA [auth n]30S ribosomal protein S13
UA [auth o]30S ribosomal protein S14
VA [auth p]30S ribosomal protein S15
WA [auth q]30S ribosomal protein S16
E [auth C]50S ribosomal protein L3
ZA [auth t]30S ribosomal protein S19
AB [auth u]30S ribosomal protein S20
BB [auth v]30S ribosomal protein Thx -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth D]IPR013005Large ribosomal subunit protein uL4-likeFamily
F [auth D]IPR002136Large ribosomal subunit protein uL4Family
F [auth D]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
G [auth E]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
G [auth E]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
G [auth E]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
G [auth E]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
G [auth E]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
G [auth E]IPR002132Large ribosomal subunit protein uL5Family
H [auth F]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
H [auth F]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
H [auth F]IPR000702Large ribosomal subunit protein uL6-likeFamily
H [auth F]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
I [auth G]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
I [auth G]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
I [auth G]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
I [auth G]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
I [auth G]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
I [auth G]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
I [auth G]IPR000244Large ribosomal subunit protein bL9Family
K [auth I]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
K [auth I]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
K [auth I]IPR000218Large ribosomal subunit protein uL14Family
K [auth I]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
N [auth L]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
N [auth L]IPR000456Large ribosomal subunit protein bL17Family
O [auth M]IPR005484Large ribosomal subunit protein uL18Family
O [auth M]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
P [auth N]IPR001857Large ribosomal subunit protein bL19Family
P [auth N]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
P [auth N]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
P [auth N]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
T [auth R]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
T [auth R]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
T [auth R]IPR013025Large ribosomal subunit protein uL23-likeFamily
U [auth S]IPR003256Large ribosomal subunit protein uL24Family
U [auth S]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
U [auth S]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
U [auth S]IPR005824KOWDomain
U [auth S]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
U [auth S]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
Y [auth W]IPR001854Large ribosomal subunit protein uL29Family
Y [auth W]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
Y [auth W]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
CA [auth a]IPR021137Large ribosomal subunit protein bL35-likeFamily
CA [auth a]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
CA [auth a]IPR001706Large ribosomal subunit protein bL35Family
CA [auth a]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
IA [auth c]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
IA [auth c]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
IA [auth c]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
IA [auth c]IPR001865Small ribosomal subunit protein uS2Family
JA [auth d]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
JA [auth d]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
JA [auth d]IPR004087K Homology domainDomain
JA [auth d]IPR004044K Homology domain, type 2Domain
JA [auth d]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
JA [auth d]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
JA [auth d]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
JA [auth d]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
LA [auth f]IPR000851Small ribosomal subunit protein uS5Family
LA [auth f]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
LA [auth f]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
LA [auth f]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
LA [auth f]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
LA [auth f]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
LA [auth f]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
PA [auth j]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
PA [auth j]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
PA [auth j]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
PA [auth j]IPR000754Small ribosomal subunit protein uS9Family
PA [auth j]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
QA [auth k]IPR001848Small ribosomal subunit protein uS10Family
QA [auth k]IPR027486Small ribosomal subunit protein uS10 domainDomain
QA [auth k]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
QA [auth k]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
SA [auth m]IPR006032Small ribosomal subunit protein uS12Family
SA [auth m]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
SA [auth m]IPR005679Ribosomal protein uS12, bacterial-typeFamily
XA [auth r]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
XA [auth r]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
XA [auth r]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
XA [auth r]IPR000266Small ribosomal subunit protein uS17Family
YA [auth s]IPR001648Small ribosomal subunit protein bS18Family
YA [auth s]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
YA [auth s]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
J [auth H]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
J [auth H]IPR005822Large ribosomal subunit protein uL13Family
J [auth H]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
J [auth H]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
L [auth J]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
L [auth J]IPR021131Large ribosomal subunit protein uL15/eL18Domain
L [auth J]IPR030878Large ribosomal subunit protein uL15Family
L [auth J]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
L [auth J]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
M [auth K]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
M [auth K]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
M [auth K]IPR016180Large ribosomal subunit protein uL16 domainDomain
M [auth K]IPR047873Large ribosomal subunit protein uL16Family
Q [auth O]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
Q [auth O]IPR005813Large ribosomal subunit protein bL20Family
R [auth P]IPR028909Large ribosomal subunit protein bL21-likeFamily
R [auth P]IPR001787Large ribosomal subunit protein bL21Family
R [auth P]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
S [auth Q]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
S [auth Q]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
S [auth Q]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
S [auth Q]IPR001063Large ribosomal subunit protein uL22Family
S [auth Q]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
V [auth T]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
V [auth T]IPR001021Ribosomal protein bL25, long-formFamily
V [auth T]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
V [auth T]IPR037121Large ribosomal subunit protein bL25, C-terminalHomologous Superfamily
V [auth T]IPR020057Large ribosomal subunit protein bL25, beta domainDomain
V [auth T]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
W [auth U]IPR001684Large ribosomal subunit protein bL27Family
W [auth U]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
X [auth V]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
X [auth V]IPR026569Large ribosomal subunit protein bL28Family
X [auth V]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
Z [auth X]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
Z [auth X]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
Z [auth X]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
Z [auth X]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
AA [auth Y]IPR002677Large ribosomal subunit protein bL32Family
AA [auth Y]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
AA [auth Y]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
BA [auth Z]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
BA [auth Z]IPR000271Large ribosomal subunit protein bL34Family
C [auth A]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
C [auth A]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
C [auth A]IPR005878Large ribosomal subunit protein uL1, bacterial-typeFamily
C [auth A]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
C [auth A]IPR002143Large ribosomal subunit protein uL1Family
C [auth A]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
DA [auth b]IPR000473Large ribosomal subunit protein bL36Family
DA [auth b]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
KA [auth e]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
KA [auth e]IPR002942RNA-binding S4 domainDomain
KA [auth e]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
KA [auth e]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
KA [auth e]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
KA [auth e]IPR022801Small ribosomal subunit protein uS4Family
MA [auth g]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
MA [auth g]IPR000529Small ribosomal subunit protein bS6Family
MA [auth g]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
MA [auth g]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
MA [auth g]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
D [auth B]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
D [auth B]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
D [auth B]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
D [auth B]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
D [auth B]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
D [auth B]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
D [auth B]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
D [auth B]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
D [auth B]IPR002171Large ribosomal subunit protein uL2Family
NA [auth h]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
NA [auth h]IPR000235Small ribosomal subunit protein uS7Family
NA [auth h]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
NA [auth h]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
NA [auth h]IPR023798Small ribosomal subunit protein uS7 domainDomain
OA [auth i]IPR000630Small ribosomal subunit protein uS8Family
OA [auth i]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
OA [auth i]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
RA [auth l]IPR001971Small ribosomal subunit protein uS11Family
RA [auth l]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
RA [auth l]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
RA [auth l]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
TA [auth n]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
TA [auth n]IPR001892Small ribosomal subunit protein uS13Family
TA [auth n]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
TA [auth n]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
TA [auth n]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
UA [auth o]IPR023053Small ribosomal subunit protein uS14, bacteriaFamily
UA [auth o]IPR001209Small ribosomal subunit protein uS14Family
UA [auth o]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
UA [auth o]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
VA [auth p]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
VA [auth p]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
VA [auth p]IPR000589Small ribosomal subunit protein uS15Family
WA [auth q]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
WA [auth q]IPR000307Small ribosomal subunit protein bS16Family
E [auth C]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
E [auth C]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
E [auth C]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
E [auth C]IPR000597Large ribosomal subunit protein uL3Family
ZA [auth t]IPR002222Small ribosomal subunit protein uS19Family
ZA [auth t]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
ZA [auth t]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
ZA [auth t]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
AB [auth u]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
AB [auth u]IPR002583Small ribosomal subunit protein bS20Family
BB [auth v]IPR030826Small ribosomal subunit protein bTHX/bTHXc/bTHXmFamily
BB [auth v]IPR031414Small ribosomal subunit protein bTHXFamily