5MDV

Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth D]SCOP2B SuperfamilyRibosomal protein L48096356 3001146 SCOP2B (2022-06-29)
K [auth E]SCOP2B SuperfamilyRL5-like8096352 3001709 SCOP2B (2022-06-29)
L [auth F]SCOP2B SuperfamilyRibosomal protein L68035397 3000724 SCOP2B (2022-06-29)
L [auth F]SCOP2B SuperfamilyRibosomal protein L68035398 3000724 SCOP2B (2022-06-29)
M [auth G]SCOP2B SuperfamilyRibosomal protein L9 C-domain8032958 3000329 SCOP2B (2022-06-29)
M [auth G]SCOP2B SuperfamilyL9 N-domain-like8032960 3000338 SCOP2B (2022-06-29)
N [auth H]SCOP2B SuperfamilyRibosomal protein L10-like8079773 3000665 SCOP2B (2022-06-29)
O [auth I]SCOP2B SuperfamilyRibosomal protein L11 C-terminal domain8032961 3001186 SCOP2B (2022-06-29)
O [auth I]SCOP2B SuperfamilyRibosomal L11/L12e N-terminal domain-like8032963 3000950 SCOP2B (2022-06-29)
P [auth J]SCOP2B SuperfamilyRibosomal protein L138096350 3001134 SCOP2B (2022-06-29)
Q [auth K]SCOP2B Superfamily50S Ribosomal protein L14-like8103358 3000433 SCOP2B (2022-06-29)
R [auth L]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8070553 3001045 SCOP2B (2022-06-29)
S [auth M]SCOP2B SuperfamilyRibosomal protein L16p/L10e8096366 3000884 SCOP2B (2022-06-29)
T [auth N]SCOP2B SuperfamilyProkaryotic ribosomal protein L178035409 3000995 SCOP2B (2022-06-29)
U [auth O]SCOP2B SuperfamilyTranslational machinery components8032969 3000571 SCOP2B (2022-06-29)
V [auth P]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8096364 3000334 SCOP2B (2022-06-29)
W [auth Q]SCOP2B SuperfamilyRibosomal protein L208096382 3000563 SCOP2B (2022-06-29)
X [auth R]SCOP2B Superfamilyl21p-like8096354 3002005 SCOP2B (2022-06-29)
Y [auth S]SCOP2B SuperfamilyRibosomal protein L228096336 3001078 SCOP2B (2022-06-29)
Z [auth T]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8035415 3000210 SCOP2B (2022-06-29)
AA [auth U]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8096358 3000334 SCOP2B (2022-06-29)
BA [auth V]SCOP2B SuperfamilyRibosomal protein L25-like8042538 3001161 SCOP2B (2022-06-29)
CA [auth W]SCOP2B SuperfamilyRibosomal L27 protein-like8096338 3000539 SCOP2B (2022-06-29)
DA [auth X]SCOP2B SuperfamilyL28p-like8035424 3001966 SCOP2B (2022-06-29)
EA [auth Y]SCOP2B SuperfamilyRibosomal protein L29 (L29p)8096370 3000713 SCOP2B (2022-06-29)
FA [auth Z]SCOP2B SuperfamilyRibosomal protein L30p/L7e8096372 3001378 SCOP2B (2022-06-29)
GA [auth a]SCOP2B SuperfamilyL28p-like8032740 3001966 SCOP2B (2022-06-29)
HA [auth b]SCOP2B SuperfamilyZn-binding ribosomal proteins8096380 3001320 SCOP2B (2022-06-29)
IA [auth c]SCOP2B SuperfamilyZn-binding ribosomal proteins8096362 3001320 SCOP2B (2022-06-29)
KA [auth e]SCOP2B SuperfamilyL35p-like8035388 3000790 SCOP2B (2022-06-29)
LA [auth f]SCOP2B SuperfamilyRibosomal protein L368035391 3001346 SCOP2B (2022-06-29)
MA [auth g]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8063838 3001397 SCOP2B (2022-06-29)
OA [auth i]SCOP2B SuperfamilyAlpha-L RNA-binding motif8083400 3001473 SCOP2B (2022-06-29)
QA [auth k]SCOP2B SuperfamilyRibosomal protein S68066495 3001323 SCOP2B (2022-06-29)
RA [auth l]SCOP2B SuperfamilyRibosomal protein S78077979 3000799 SCOP2B (2022-06-29)
SA [auth m]SCOP2B SuperfamilyRibosomal protein S88079059 3000709 SCOP2B (2022-06-29)
TA [auth n]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082661 3000100 SCOP2B (2022-06-29)
UA [auth o]SCOP2B SuperfamilyRibosomal protein S108102681 3001336 SCOP2B (2022-06-29)
VA [auth p]SCOP2B SuperfamilyTranslational machinery components8035368 3000571 SCOP2B (2022-06-29)
WA [auth q]SCOP2B SuperfamilyNucleic acid-binding proteins8106545 3000135 SCOP2B (2022-06-29)
XA [auth r]SCOP2B SuperfamilyS13-like H2TH domain8098358 3000053 SCOP2B (2022-06-29)
YA [auth s]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052568 3000068 SCOP2B (2022-06-29)
ZA [auth t]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8032375 3001284 SCOP2B (2022-06-29)
AB [auth u]SCOP2B SuperfamilyRibosomal protein S168106547 3000680 SCOP2B (2022-06-29)
BB [auth v]SCOP2B SuperfamilyNucleic acid-binding proteins8059276 3000135 SCOP2B (2022-06-29)
DB [auth x]SCOP2B SuperfamilyRibosomal protein S198103915 3000686 SCOP2B (2022-06-29)
FB [auth z]SCOP2B SuperfamilyRibosomal protein S218053090 3002159 SCOP2B (2022-06-29)
G [auth 7]SCOP2B SuperfamilyRelease factor N-terminal domain-like8038812 3001827 SCOP2B (2022-06-29)
G [auth 7]SCOP2B SuperfamilyRNA-binding domain RBD8054399 3000110 SCOP2B (2022-06-29)
G [auth 7]SCOP2B SuperfamilyPeptidyl-tRNA hydrolase domain-like8054401 3001421 SCOP2B (2022-06-29)
H [auth B]SCOP2B SuperfamilyNucleic acid-binding proteins8035394 3000135 SCOP2B (2022-06-29)
H [auth B]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8035393 3000334 SCOP2B (2022-06-29)
I [auth C]SCOP2B SuperfamilyTranslational proteins8032955 3000811 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth D]PF00573e5mdvD1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
K [auth E]PF00281,PF00673e5mdvE1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
L [auth F]PF00347e5mdvF2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
M [auth G]PF01281e5mdvG2 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: PF01281ECOD (1.6)
M [auth G]PF03948e5mdvG1 A: a+b two layersX: Ribosomal protein L9 C-domain (From Topology)H: Ribosomal protein L9 C-domain (From Topology)T: Ribosomal protein L9 C-domainF: PF03948ECOD (1.6)
N [auth H]PF00466e5mdvH1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
O [auth I]PF00298e5mdvI1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
O [auth I]PF03946e5mdvI2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
P [auth J]PF00572e5mdvJ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
Q [auth K]PF00238e5mdvK1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
R [auth L]PF00828e5mdvL1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
S [auth M]PF00252e5mdvM1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
T [auth N]PF01196e5mdvN1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
U [auth O]PF00861e5mdvO1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
V [auth P]PF01245e5mdvP1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
W [auth Q]PF00453e5mdvQ1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
X [auth R]PF00829e5mdvR1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
Y [auth S]PF00237e5mdvS1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
Z [auth T]PF00276e5mdvT1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
AA [auth U]PF00467,PF17136e5mdvU1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
BA [auth V]PF01386e5mdvV1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01386ECOD (1.6)
CA [auth W]PF01016e5mdvW1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
DA [auth X]PF00830e5mdvX1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: PF00830ECOD (1.6)
EA [auth Y]PF00831e5mdvY1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
FA [auth Z]PF00327e5mdvZ1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
GA [auth a]PF01197e5mdva1 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: PF01197ECOD (1.6)
HA [auth b]PF01783e5mdvb1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
IA [auth c]PF00471e5mdvc1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
JA [auth d]PF00468e5mdvd1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
KA [auth e]PF01632e5mdve1 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: PF01632ECOD (1.6)
LA [auth f]PF00444e5mdvf1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)
MA [auth g]PF00318e5mdvg1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
NA [auth h]PF00189e5mdvh2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
NA [auth h]PF07650e5mdvh1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
OA [auth i]PF00163,PF01479e5mdvi1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
PA [auth j]PF03719e5mdvj2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
PA [auth j]PF00333e5mdvj1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
QA [auth k]PF01250e5mdvk1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
RA [auth l]PF00177e5mdvl1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
SA [auth m]PF00410e5mdvm1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
SA [auth m]PF00410e5mdvm2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
TA [auth n]PF00380e5mdvn1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
UA [auth o]PF00338e5mdvo1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
VA [auth p]PF00411e5mdvp1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
WA [auth q]PF00164e5mdvq1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
XA [auth r]PF00416e5mdvr1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
YA [auth s]PF00253e5mdvs1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
ZA [auth t]PF00312e5mdvt1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
AB [auth u]PF00886e5mdvu1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: PF00886ECOD (1.6)
BB [auth v]PF00366e5mdvv1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366ECOD (1.6)
CB [auth w]PF01084e5mdvw1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
DB [auth x]PF00203e5mdvx1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
EB [auth y]PF01649e5mdvy1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: PF01649ECOD (1.6)
FB [auth z]PF01165e5mdvz1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: PF01165ECOD (1.6)
G [auth 7]PF03462e5mdv74 A: alpha bundlesX: Release factor (Pfam 00472) N-terminal alpha helical domain (From Topology)H: Release factor (Pfam 00472) N-terminal alpha helical domain (From Topology)T: Release factor (Pfam 00472) N-terminal alpha helical domainF: PF03462ECOD (1.6)
G [auth 7]PF03462e5mdv71 A: a+b two layersX: Alpha-beta plaitsH: Ferredoxin-like domain in release factor (From Topology)T: Ferredoxin-like domain in release factorF: PF03462ECOD (1.6)
G [auth 7]F_UNCLASSIFIEDe5mdv72 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: F_UNCLASSIFIEDECOD (1.6)
G [auth 7]PF00472e5mdv73 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: PF00472ECOD (1.6)
H [auth B]PF00181e5mdvB2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
H [auth B]PF03947e5mdvB1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
I [auth C]PF00297e5mdvC1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth D]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
K [auth E]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
K [auth E]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
L [auth F]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
M [auth G]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
M [auth G]PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domain- Domain
N [auth H]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
O [auth I]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
O [auth I]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
P [auth J]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
Q [auth K]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
R [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
S [auth M]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
T [auth N]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
U [auth O]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
V [auth P]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
W [auth Q]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
X [auth R]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
Y [auth S]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
Z [auth T]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
AA [auth U]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
AA [auth U]PF00467KOW motif (KOW)KOW motif- Family
BA [auth V]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
CA [auth W]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
DA [auth X]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
EA [auth Y]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
FA [auth Z]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
GA [auth a]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
HA [auth b]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
IA [auth c]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
JA [auth d]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
KA [auth e]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
LA [auth f]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
MA [auth g]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
NA [auth h]PF07650KH domain (KH_2)KH domain- Domain
NA [auth h]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
OA [auth i]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
OA [auth i]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
PA [auth j]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
PA [auth j]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
QA [auth k]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
RA [auth l]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
SA [auth m]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
TA [auth n]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
UA [auth o]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
VA [auth p]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
WA [auth q]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
XA [auth r]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
YA [auth s]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
ZA [auth t]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
AB [auth u]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
BB [auth v]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
CB [auth w]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
DB [auth x]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
EB [auth y]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
FB [auth z]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
F [auth 6]PF03889Alternative ribosome-rescue factor A (ArfA)Alternative ribosome-rescue factor ADuring translation of messenger RNAs by ribosomes, translation sometimes pauses or stalls. Ribosomes stalled on mRNAs need to be rescued for reuse in order to maintain proper translation capacity. Rescue systems such as ArfA-RF2 and ArfB (formerly kn ...During translation of messenger RNAs by ribosomes, translation sometimes pauses or stalls. Ribosomes stalled on mRNAs need to be rescued for reuse in order to maintain proper translation capacity. Rescue systems such as ArfA-RF2 and ArfB (formerly known as YaeJ) are present in many bacterial species. Family members such as ArfA cooperates with the canonical peptide release factor RF2 to hydrolyse the peptidyl-tRNA in the non-stop complex. Structural and biochemical analysis show that ArfA anchors its positively charged C-terminal in the mRNA entry channel of the ribosome. Whereas its N terminus is sandwiched between the decoding centre and the switch loop of RF2, leading to marked conformational changes in both the decoding centre and RF2 thereby triggering RF2 peptidyl-hydrolysing activity [1] [2].
Domain
G [auth 7]PF03462PCRF domain (PCRF)PCRF domainThis domain is found in peptide chain release factors.Domain
G [auth 7]PF00472RF-1 domain (RF-1)RF-1 domain- Family
H [auth B]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
H [auth B]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
I [auth C]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]23S ribosomal RNA---
J [auth D]50S ribosomal protein L4
K [auth E]50S ribosomal protein L5
L [auth F]50S ribosomal protein L6
M [auth G]50S ribosomal protein L9
N [auth H]50S ribosomal protein L10
O [auth I]50S ribosomal protein L11
P [auth J]50S ribosomal protein L13
Q [auth K]50S ribosomal protein L14
R [auth L]50S ribosomal protein L15
S [auth M]50S ribosomal protein L16
B [auth 2]16S ribosomal RNA---
T [auth N]50S ribosomal protein L17
U [auth O]50S ribosomal protein L18
V [auth P]50S ribosomal protein L19
W [auth Q]50S ribosomal protein L20
X [auth R]50S ribosomal protein L21
Y [auth S]50S ribosomal protein L22
Z [auth T]50S ribosomal protein L23
AA [auth U]50S ribosomal protein L24
BA [auth V]50S ribosomal protein L25
CA [auth W]50S ribosomal protein L27
C [auth 3]5S ribosomal RNA---
DA [auth X]50S ribosomal protein L28
EA [auth Y]50S ribosomal protein L29
FA [auth Z]50S ribosomal protein L30
GA [auth a]50S ribosomal protein L31
HA [auth b]50S ribosomal protein L32
IA [auth c]50S ribosomal protein L33
JA [auth d]50S ribosomal protein L34
KA [auth e]50S ribosomal protein L35
LA [auth f]50S ribosomal protein L36
MA [auth g]30S ribosomal protein S2
D [auth 4]mRNA---
NA [auth h]30S ribosomal protein S3
OA [auth i]30S ribosomal protein S4
PA [auth j]30S ribosomal protein S5
QA [auth k]30S ribosomal protein S6
RA [auth l]30S ribosomal protein S7
SA [auth m]30S ribosomal protein S8
TA [auth n]30S ribosomal protein S9
UA [auth o]30S ribosomal protein S10
VA [auth p]30S ribosomal protein S11
WA [auth q]30S ribosomal protein S12
E [auth 5]fMet-NH-tRNA(fMet)---
XA [auth r]30S ribosomal protein S13
YA [auth s]30S ribosomal protein S14
ZA [auth t]30S ribosomal protein S15
AB [auth u]30S ribosomal protein S16
BB [auth v]30S ribosomal protein S17
CB [auth w]30S ribosomal protein S18
DB [auth x]30S ribosomal protein S19
EB [auth y]30S ribosomal protein S20
FB [auth z]30S ribosomal protein S21
F [auth 6]Alternative ribosome-rescue factor A -
G [auth 7]Peptide chain release factor 2
H [auth B]50S ribosomal protein L2
I [auth C]50S ribosomal protein L3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth D]IPR013005Large ribosomal subunit protein uL4-likeFamily
J [auth D]IPR002136Large ribosomal subunit protein uL4Family
J [auth D]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
K [auth E]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
K [auth E]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
K [auth E]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
K [auth E]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
K [auth E]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
K [auth E]IPR002132Large ribosomal subunit protein uL5Family
L [auth F]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
L [auth F]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
L [auth F]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
L [auth F]IPR000702Large ribosomal subunit protein uL6-likeFamily
L [auth F]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
M [auth G]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
M [auth G]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
M [auth G]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
M [auth G]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
M [auth G]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
M [auth G]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
M [auth G]IPR000244Large ribosomal subunit protein bL9Family
N [auth H]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
N [auth H]IPR001790Large ribosomal subunit protein uL10Family
N [auth H]IPR022973Large ribosomal subunit protein uL10, bacterialFamily
N [auth H]IPR002363Large ribosomal subunit protein uL10, conserved site, bacteriaConserved Site
N [auth H]IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily
O [auth I]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
O [auth I]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
O [auth I]IPR000911Ribosomal protein uL11Family
O [auth I]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
O [auth I]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
O [auth I]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
O [auth I]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
P [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
P [auth J]IPR005822Large ribosomal subunit protein uL13Family
P [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
P [auth J]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
Q [auth K]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
Q [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
Q [auth K]IPR000218Large ribosomal subunit protein uL14Family
Q [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
R [auth L]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
R [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
R [auth L]IPR030878Large ribosomal subunit protein uL15Family
R [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
R [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
S [auth M]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
S [auth M]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
S [auth M]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
S [auth M]IPR016180Large ribosomal subunit protein uL16 domainDomain
S [auth M]IPR047873Large ribosomal subunit protein uL16Family
T [auth N]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
T [auth N]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
T [auth N]IPR000456Large ribosomal subunit protein bL17Family
U [auth O]IPR005484Large ribosomal subunit protein uL18Family
U [auth O]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
V [auth P]IPR001857Large ribosomal subunit protein bL19Family
V [auth P]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
V [auth P]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
V [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
W [auth Q]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
W [auth Q]IPR005813Large ribosomal subunit protein bL20Family
X [auth R]IPR028909Large ribosomal subunit protein bL21-likeFamily
X [auth R]IPR001787Large ribosomal subunit protein bL21Family
X [auth R]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
X [auth R]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
Y [auth S]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
Y [auth S]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
Y [auth S]IPR001063Large ribosomal subunit protein uL22Family
Y [auth S]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
Y [auth S]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
Z [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Z [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
Z [auth T]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
Z [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
AA [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
AA [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth U]IPR003256Large ribosomal subunit protein uL24Family
AA [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
AA [auth U]IPR005824KOWDomain
AA [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
BA [auth V]IPR020055Ribosomal protein bL25, short-formFamily
BA [auth V]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
BA [auth V]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
BA [auth V]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
CA [auth W]IPR001684Large ribosomal subunit protein bL27Family
CA [auth W]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
DA [auth X]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
DA [auth X]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
DA [auth X]IPR026569Large ribosomal subunit protein bL28Family
DA [auth X]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
EA [auth Y]IPR001854Large ribosomal subunit protein uL29Family
EA [auth Y]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
EA [auth Y]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
FA [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
FA [auth Z]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
FA [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
FA [auth Z]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
GA [auth a]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
GA [auth a]IPR027491Large ribosomal subunit protein bL31 type AFamily
GA [auth a]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
GA [auth a]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
HA [auth b]IPR002677Large ribosomal subunit protein bL32Family
HA [auth b]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
HA [auth b]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
IA [auth c]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
IA [auth c]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
IA [auth c]IPR001705Large ribosomal subunit protein bL33Family
IA [auth c]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
JA [auth d]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
JA [auth d]IPR000271Large ribosomal subunit protein bL34Family
KA [auth e]IPR021137Large ribosomal subunit protein bL35-likeFamily
KA [auth e]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
KA [auth e]IPR001706Large ribosomal subunit protein bL35Family
KA [auth e]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
LA [auth f]IPR000473Large ribosomal subunit protein bL36Family
LA [auth f]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
MA [auth g]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
MA [auth g]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
MA [auth g]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
MA [auth g]IPR001865Small ribosomal subunit protein uS2Family
NA [auth h]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
NA [auth h]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
NA [auth h]IPR004087K Homology domainDomain
NA [auth h]IPR004044K Homology domain, type 2Domain
NA [auth h]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
NA [auth h]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
NA [auth h]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
NA [auth h]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
OA [auth i]IPR002942RNA-binding S4 domainDomain
OA [auth i]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
OA [auth i]IPR022801Small ribosomal subunit protein uS4Family
OA [auth i]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
OA [auth i]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
OA [auth i]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
PA [auth j]IPR000851Small ribosomal subunit protein uS5Family
PA [auth j]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
PA [auth j]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
PA [auth j]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
PA [auth j]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
PA [auth j]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
PA [auth j]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
QA [auth k]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
QA [auth k]IPR000529Small ribosomal subunit protein bS6Family
QA [auth k]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
QA [auth k]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
QA [auth k]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
RA [auth l]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
RA [auth l]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
RA [auth l]IPR000235Small ribosomal subunit protein uS7Family
RA [auth l]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
RA [auth l]IPR023798Small ribosomal subunit protein uS7 domainDomain
SA [auth m]IPR000630Small ribosomal subunit protein uS8Family
SA [auth m]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
SA [auth m]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
TA [auth n]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
TA [auth n]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
TA [auth n]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
TA [auth n]IPR000754Small ribosomal subunit protein uS9Family
TA [auth n]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
UA [auth o]IPR027486Small ribosomal subunit protein uS10 domainDomain
UA [auth o]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
UA [auth o]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
UA [auth o]IPR001848Small ribosomal subunit protein uS10Family
VA [auth p]IPR001971Small ribosomal subunit protein uS11Family
VA [auth p]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
VA [auth p]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
VA [auth p]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
WA [auth q]IPR005679Ribosomal protein uS12, bacterial-typeFamily
WA [auth q]IPR006032Small ribosomal subunit protein uS12Family
WA [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
XA [auth r]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
XA [auth r]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
XA [auth r]IPR001892Small ribosomal subunit protein uS13Family
XA [auth r]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
XA [auth r]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
YA [auth s]IPR001209Small ribosomal subunit protein uS14Family
YA [auth s]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
YA [auth s]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
ZA [auth t]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
ZA [auth t]IPR000589Small ribosomal subunit protein uS15Family
ZA [auth t]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
AB [auth u]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
AB [auth u]IPR000307Small ribosomal subunit protein bS16Family
AB [auth u]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
BB [auth v]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
BB [auth v]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
BB [auth v]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
BB [auth v]IPR000266Small ribosomal subunit protein uS17Family
CB [auth w]IPR001648Small ribosomal subunit protein bS18Family
CB [auth w]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
CB [auth w]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
DB [auth x]IPR002222Small ribosomal subunit protein uS19Family
DB [auth x]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
DB [auth x]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
DB [auth x]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
EB [auth y]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
EB [auth y]IPR002583Small ribosomal subunit protein bS20Family
FB [auth z]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
FB [auth z]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
FB [auth z]IPR001911Small ribosomal subunit protein bS21Family
F [auth 6]IPR005589Alternative ribosome-rescue factor AFamily
G [auth 7]IPR004374Peptide chain release factor 2Family
G [auth 7]IPR000352Peptide chain release factor class IDomain
G [auth 7]IPR045853Peptide chain release factor class I superfamilyHomologous Superfamily
G [auth 7]IPR005139Peptide chain release factorDomain
H [auth B]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
H [auth B]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
H [auth B]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
H [auth B]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
H [auth B]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
H [auth B]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
H [auth B]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
H [auth B]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
H [auth B]IPR002171Large ribosomal subunit protein uL2Family
I [auth C]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
I [auth C]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
I [auth C]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
I [auth C]IPR000597Large ribosomal subunit protein uL3Family

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A [auth 1]1MG Parent Component: G

A [auth 1]2MA Parent Component: A

A [auth 1]2MG Parent Component: G

A [auth 1]3TD Parent Component: U

A [auth 1]5MC Parent Component: C

A [auth 1]5MU Parent Component: U

A [auth 1]6MZ Parent Component: A

A [auth 1]G7M Parent Component: G

A [auth 1]OMC Parent Component: C

A [auth 1]OMG Parent Component: G

A [auth 1]OMU Parent Component: U

A [auth 1]PSU Parent Component: U

B [auth 2]2MG Parent Component: G

B [auth 2]4OC Parent Component: C

B [auth 2]5MC Parent Component: C

B [auth 2]7MG Parent Component: G

B [auth 2]MA6 Parent Component: A

B [auth 2]PSU Parent Component: U

B [auth 2]UR3 Parent Component: U

WA [auth q]0TD Parent Component: ASP

E [auth 5]4OC Parent Component: C

E [auth 5]4SU Parent Component: U

E [auth 5]5MU Parent Component: U

E [auth 5]8AN Parent Component: A

E [auth 5]FME Parent Component: MET

RESIDAA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
E [auth 5]H2U Parent Component: U

RESIDAA0021 , AA0566

E [auth 5]PSU Parent Component: U

RESIDAA0021 , AA0566

G [auth 7]MEQ Parent Component: GLN

RESIDAA0021 , AA0566 , AA0071

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N5-methyl-L-glutamine MOD:00080