5TAZ

Structure of rabbit RyR1 (ryanodine dataset, class 3)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth F]SCOP2B SuperfamilyRotamase-like8034864 3000622 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyRotamase-like8034864 3000622 SCOP2B (2022-06-29)
C [auth H]SCOP2B SuperfamilyRotamase-like8034864 3000622 SCOP2B (2022-06-29)
D [auth J]SCOP2B SuperfamilyRotamase-like8034864 3000622 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth F]PF00254e5tazF1 A: a+b two layersX: FKBP-likeH: FKBP-likeT: FKBP-likeF: PF00254ECOD (1.6)
B [auth A]PF00254e5tazA1 A: a+b two layersX: FKBP-likeH: FKBP-likeT: FKBP-likeF: PF00254ECOD (1.6)
C [auth H]PF00254e5tazH1 A: a+b two layersX: FKBP-likeH: FKBP-likeT: FKBP-likeF: PF00254ECOD (1.6)
D [auth J]PF00254e5tazJ1 A: a+b two layersX: FKBP-likeH: FKBP-likeT: FKBP-likeF: PF00254ECOD (1.6)
E [auth B]PF00622e5tazB8 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: PF00622ECOD (1.6)
E [auth B]PF02815e5tazB9 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: PF02815ECOD (1.6)
E [auth B]PF08709e5tazB10 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: PF08709ECOD (1.6)
E [auth B]PF13499e5tazB12 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: PF13499ECOD (1.6)
E [auth B]PF02026e5tazB6 A: alpha duplicates or obligate multimersX: RyR motifs (From Topology)H: RyR motifs (From Topology)T: RyR motifsF: PF02026ECOD (1.6)
E [auth B]PF01365e5tazB5 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF01365ECOD (1.6)
E [auth B]PF08454e5tazB2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF08454ECOD (1.6)
E [auth B]PF21119e5tazB4 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF21119ECOD (1.6)
E [auth B]PF00520,PF06459e5tazB1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: PF00520,PF06459ECOD (1.6)
F [auth I]PF00622e5tazI8 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: PF00622ECOD (1.6)
F [auth I]PF02815e5tazI9 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: PF02815ECOD (1.6)
F [auth I]PF08709e5tazI10 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: PF08709ECOD (1.6)
F [auth I]PF13499e5tazI12 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: PF13499ECOD (1.6)
F [auth I]PF02026e5tazI6 A: alpha duplicates or obligate multimersX: RyR motifs (From Topology)H: RyR motifs (From Topology)T: RyR motifsF: PF02026ECOD (1.6)
F [auth I]PF01365e5tazI5 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF01365ECOD (1.6)
F [auth I]PF08454e5tazI2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF08454ECOD (1.6)
F [auth I]PF21119e5tazI4 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF21119ECOD (1.6)
F [auth I]PF00520,PF06459e5tazI1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: PF00520,PF06459ECOD (1.6)
GPF00622e5tazG8 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: PF00622ECOD (1.6)
GPF02815e5tazG9 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: PF02815ECOD (1.6)
GPF08709e5tazG10 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: PF08709ECOD (1.6)
GPF13499e5tazG12 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: PF13499ECOD (1.6)
GPF02026e5tazG6 A: alpha duplicates or obligate multimersX: RyR motifs (From Topology)H: RyR motifs (From Topology)T: RyR motifsF: PF02026ECOD (1.6)
GPF01365e5tazG5 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF01365ECOD (1.6)
GPF08454e5tazG2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF08454ECOD (1.6)
GPF21119e5tazG4 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF21119ECOD (1.6)
GPF00520,PF06459e5tazG1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: PF00520,PF06459ECOD (1.6)
H [auth E]PF00622e5tazE8 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: PF00622ECOD (1.6)
H [auth E]PF02815e5tazE9 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: PF02815ECOD (1.6)
H [auth E]PF08709e5tazE10 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: PF08709ECOD (1.6)
H [auth E]PF13499e5tazE12 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: PF13499ECOD (1.6)
H [auth E]PF02026e5tazE6 A: alpha duplicates or obligate multimersX: RyR motifs (From Topology)H: RyR motifs (From Topology)T: RyR motifsF: PF02026ECOD (1.6)
H [auth E]PF01365e5tazE5 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF01365ECOD (1.6)
H [auth E]PF08454e5tazE2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF08454ECOD (1.6)
H [auth E]PF21119e5tazE4 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF21119ECOD (1.6)
H [auth E]PF00520,PF06459e5tazE1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: PF00520,PF06459ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth F],
B [auth A],
C [auth H],
D [auth J]
PF00254FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP_C)FKBP-type peptidyl-prolyl cis-trans isomerase- Domain
E [auth B],
F [auth I],
G,
H [auth E]
PF00622SPRY domain (SPRY)SPRY domain- Family
E [auth B],
F [auth I],
G,
H [auth E]
PF08454RyR and IP3R Homology associated (RIH_assoc)RyR and IP3R Homology associated- Repeat
E [auth B],
F [auth I],
G,
H [auth E]
PF02815MIR domain (MIR)MIR domainThe MIR (protein mannosyltransferase, IP3R and RyR) domain is a domain that may have a ligand transferase function [1].Domain
E [auth B],
F [auth I],
G,
H [auth E]
PF08709Inositol 1,4,5-trisphosphate/ryanodine receptor (Ins145_P3_rec)Inositol 1,4,5-trisphosphate/ryanodine receptorThis domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N terminal region of the ryanodine receptor. Both receptors are involved in Ca2+ release. They can couple to the activation of neurotransmitter-ga ...This domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N terminal region of the ryanodine receptor. Both receptors are involved in Ca2+ release. They can couple to the activation of neurotransmitter-gated receptors and voltage-gated Ca2+ channels on the plasma membrane, thus allowing the endoplasmic reticulum discriminate between different types of neuronal activity [1].
Domain
E [auth B],
F [auth I],
G,
H [auth E]
PF21119Ryanodine receptor junctional solenoid repeat (RYDR_Jsol)Ryanodine receptor junctional solenoid repeatThis entry represents a region of the Ryanodine receptor composed of alpha helical ARM repeats [1]. This region has been termed the Junctional solenoid region (Jsol) [1].Domain
E [auth B],
F [auth I],
G,
H [auth E]
PF01365RIH domain (RYDR_ITPR)RIH domain- Repeat
E [auth B],
F [auth I],
G,
H [auth E]
PF02026RyR domain (RyR)RyR domain- Family
E [auth B],
F [auth I],
G,
H [auth E]
PF00520Ion transport protein (Ion_trans)Ion transport protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth F],
B [auth A],
C [auth H],
D [auth J]
Peptidyl-prolyl cis-trans isomerase FKBP1B
E [auth B],
F [auth I],
G,
H [auth E]
Ryanodine receptor 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth F],
B [auth A],
C [auth H],
D [auth J]
IPR046357Peptidyl-prolyl cis-trans isomerase domain superfamilyHomologous Superfamily
A [auth F],
B [auth A],
C [auth H],
D [auth J]
IPR001179FKBP-type peptidyl-prolyl cis-trans isomerase domainDomain
E [auth B],
F [auth I],
G,
H [auth E]
IPR036300Mir domain superfamilyHomologous Superfamily
E [auth B],
F [auth I],
G,
H [auth E]
IPR000699RIH domainDomain
E [auth B],
F [auth I],
G,
H [auth E]
IPR013662RyR/IP3R Homology associated domainDomain
E [auth B],
F [auth I],
G,
H [auth E]
IPR016093MIR motifDomain
E [auth B],
F [auth I],
G,
H [auth E]
IPR013320Concanavalin A-like lectin/glucanase domain superfamilyHomologous Superfamily
E [auth B],
F [auth I],
G,
H [auth E]
IPR003877SPRY domainDomain
E [auth B],
F [auth I],
G,
H [auth E]
IPR001870B30.2/SPRY domainDomain
E [auth B],
F [auth I],
G,
H [auth E]
IPR009460Ryanodine Receptor TM 4-6Domain
E [auth B],
F [auth I],
G,
H [auth E]
IPR015925Ryanodine/Inositol 1,4,5-trisphosphate receptorFamily
E [auth B],
F [auth I],
G,
H [auth E]
IPR048581Ryanodine receptor, junctional solenoid domainDomain
E [auth B],
F [auth I],
G,
H [auth E]
IPR035910RyR/IP3 receptor binding core, RIH domain superfamilyHomologous Superfamily
E [auth B],
F [auth I],
G,
H [auth E]
IPR003032Ryanodine receptor RyrDomain
E [auth B],
F [auth I],
G,
H [auth E]
IPR035761Ryanodine receptor, SPRY domain 1Domain
E [auth B],
F [auth I],
G,
H [auth E]
IPR014821Inositol 1,4,5-trisphosphate/ryanodine receptorDomain
E [auth B],
F [auth I],
G,
H [auth E]
IPR035764Ryanodine receptor, SPRY domain 2Domain
E [auth B],
F [auth I],
G,
H [auth E]
IPR013333Ryanodine receptorFamily
E [auth B],
F [auth I],
G,
H [auth E]
IPR043136B30.2/SPRY domain superfamilyHomologous Superfamily
E [auth B],
F [auth I],
G,
H [auth E]
IPR011992EF-hand domain pairHomologous Superfamily
E [auth B],
F [auth I],
G,
H [auth E]
IPR005821Ion transport domainDomain
E [auth B],
F [auth I],
G,
H [auth E]
IPR035762Ryanodine receptor, SPRY domain 3Domain