6J0M

Cryo-EM Structure of an Extracellular Contractile Injection System, PVC baseplate in extended state (reconstructed with C3 symmetry)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	UNK_F_TYPE	e6j0mA3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: UNK_F_TYPE	ECOD (1.6)
A	Phage_base_V	e6j0mA1	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
A	Phage_GPD_2nd	e6j0mA2	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: Phage_GPD_2nd	ECOD (1.6)
A	UNK_F_TYPE	e6j0mA4	A: a+b complex topology	X: C-terminal insertion domain in phage tail proteins (From Topology)	H: C-terminal insertion domain in phage tail proteins (From Topology)	T: C-terminal insertion domain in phage tail proteins	F: UNK_F_TYPE	ECOD (1.6)
B	UNK_F_TYPE	e6j0mB3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: UNK_F_TYPE	ECOD (1.6)
B	Phage_base_V	e6j0mB1	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
B	Phage_GPD_2nd	e6j0mB2	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: Phage_GPD_2nd	ECOD (1.6)
B	UNK_F_TYPE	e6j0mB4	A: a+b complex topology	X: C-terminal insertion domain in phage tail proteins (From Topology)	H: C-terminal insertion domain in phage tail proteins (From Topology)	T: C-terminal insertion domain in phage tail proteins	F: UNK_F_TYPE	ECOD (1.6)
C	UNK_F_TYPE	e6j0mC3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: UNK_F_TYPE	ECOD (1.6)
C	Phage_base_V	e6j0mC1	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
C	Phage_GPD_2nd	e6j0mC2	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: Phage_GPD_2nd	ECOD (1.6)
C	UNK_F_TYPE	e6j0mC4	A: a+b complex topology	X: C-terminal insertion domain in phage tail proteins (From Topology)	H: C-terminal insertion domain in phage tail proteins (From Topology)	T: C-terminal insertion domain in phage tail proteins	F: UNK_F_TYPE	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF04717	Type VI secretion system/phage-baseplate injector OB domain (Phage_base_V)	Type VI secretion system/phage-baseplate injector OB domain	Family of bacterial and phage baseplate assembly proteins responsible for forming the small spike at the end of the tail or bacterial pathogenic needle-shaft [1]. This entry represents the OB fold part of the structure. This structure contains an unu ...	Family of bacterial and phage baseplate assembly proteins responsible for forming the small spike at the end of the tail or bacterial pathogenic needle-shaft [1]. This entry represents the OB fold part of the structure. This structure contains an unusual extra beta hairpin that forms the foundation of the spike protein's beta helix [3].	Domain
A, B, C	PF05954	Phage tail baseplate hub (GPD) (Phage_GPD)	Phage tail baseplate hub (GPD)	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR006531	Gp5/Type VI secretion system Vgr protein, OB-fold domain	Domain
A, B, C	IPR037026	Vgr protein, OB-fold domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.