6MTE

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
L [auth I]SCOP2B SuperfamilyRibosomal protein L16p/L10e8097320 3000884 SCOP2B (2022-06-29)
M [auth J]SCOP2B SuperfamilyRL5-like8073894 3001709 SCOP2B (2022-06-29)
P [auth N]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082477 3000210 SCOP2B (2022-06-29)
X [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like8072048 3000433 SCOP2B (2022-06-29)
AA [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076754 3000334 SCOP2B (2022-06-29)
BA [auth Z]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053047 3000334 SCOP2B (2022-06-29)
CA [auth a]SCOP2 FamilyRibosomal proteins L15p and L18e8097817 4003555 SCOP2 (2022-06-29)
CA [auth a]SCOP2 SuperfamilyRibosomal proteins L15p and L18e8097818 3001045 SCOP2 (2022-06-29)
EA [auth c]SCOP2B SuperfamilyL30e-like8094953 3001739 SCOP2B (2022-06-29)
GA [auth e]SCOP2B SuperfamilyRibosomal protein L32e8102088 3000982 SCOP2B (2022-06-29)
HA [auth f]SCOP2B SuperfamilyTranslational proteins8093714 3000811 SCOP2B (2022-06-29)
IA [auth g]SCOP2B SuperfamilyRibosomal protein L34e-like8053540 3002203 SCOP2B (2022-06-29)
KA [auth i]SCOP2B SuperfamilyRibosomal protein L36e8053119 3002161 SCOP2B (2022-06-29)
MA [auth k]SCOP2B SuperfamilyRibosomal L38e protein-like8099378 3002206 SCOP2B (2022-06-29)
NA [auth l]SCOP2B SuperfamilyRibosomal protein L39e8095597 3001756 SCOP2B (2022-06-29)
RA [auth p]SCOP2B SuperfamilyZn-binding ribosomal proteins8101435 3001320 SCOP2B (2022-06-29)
E [auth B]SCOP2B SuperfamilyTranslational proteins8078357 3000811 SCOP2B (2022-06-29)
ZA [auth BB]SCOP2B SuperfamilyRibosomal S3Ae-like8053216 3002166 SCOP2B (2022-06-29)
DB [auth FF]SCOP2B SuperfamilyRibosomal protein S78066001 3000799 SCOP2B (2022-06-29)
IB [auth KK]SCOP2B SuperfamilyWinged helix DNA-binding domain8055720 3000034 SCOP2B (2022-06-29)
JB [auth LL]SCOP2B SuperfamilyNucleic acid-binding proteins8052707 3000135 SCOP2B (2022-06-29)
JB [auth LL]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052708 3002138 SCOP2B (2022-06-29)
KB [auth MM]SCOP2B SuperfamilyL30e-like8063980 3001739 SCOP2B (2022-06-29)
LB [auth NN]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052971 3001284 SCOP2B (2022-06-29)
LB [auth NN]SCOP2B SuperfamilyHomeodomain-like8052970 3000001 SCOP2B (2022-06-29)
MB [auth OO]SCOP2 FamilyRibosomal protein L18p and S118098495 4000555 SCOP2 (2022-06-29)
MB [auth OO]SCOP2 SuperfamilyTranslational machinery components8098496 3000571 SCOP2 (2022-06-29)
OB [auth QQ]SCOP2 FamilyTranslational machinery components8099417 4000951 SCOP2 (2022-06-29)
OB [auth QQ]SCOP2 SuperfamilyRibosomal protein S5 domain 2-like8099418 3000100 SCOP2 (2022-06-29)
QB [auth SS]SCOP2B SuperfamilyS13-like H2TH domain8101439 3000053 SCOP2B (2022-06-29)
G [auth D]SCOP2B SuperfamilyTranslational machinery components8052886 3000571 SCOP2B (2022-06-29)
SB [auth UU]SCOP2B SuperfamilyRibosomal protein S108099428 3001336 SCOP2B (2022-06-29)
TB [auth VV]SCOP2 FamilyRibosomal protein S21e8099375 4006215 SCOP2 (2022-06-29)
TB [auth VV]SCOP2 SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8099376 3000068 SCOP2 (2022-06-29)
UB [auth WW]SCOP2B SuperfamilyRibosomal protein S88079081 3000709 SCOP2B (2022-06-29)
XB [auth ZZ]SCOP2B SuperfamilyWinged helix DNA-binding domain8090991 3000034 SCOP2B (2022-06-29)
YB [auth aa]SCOP2 FamilyRibosomal protein S26e8099545 4006236 SCOP2 (2022-06-29)
YB [auth aa]SCOP2 SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8099546 3000068 SCOP2 (2022-06-29)
AC [auth cc]SCOP2B SuperfamilyNucleic acid-binding proteins8095265 3000135 SCOP2B (2022-06-29)
BC [auth dd]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052584 3000068 SCOP2B (2022-06-29)
CC [auth ee]SCOP2B SuperfamilyRibosomal protein S30e-like8053455 3002190 SCOP2B (2022-06-29)
EC [auth gg]SCOP2B SuperfamilyWD40 repeat-like8097816 3001694 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth G]PF01248e6mteG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
K [auth H]PF00347e6mteH2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
L [auth I]PF00252e6mteI1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
M [auth J]PF00281,PF00673e6mteJ1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
N [auth L]PF01294e6mteL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
O [auth M]PF00467,PF01929e6mteM1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
P [auth N]PF00827e6mteN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
Q [auth O]PF00572e6mteO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
R [auth P]PF00237e6mteP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
S [auth Q]PF17135e6mteQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
T [auth R]PF01280e6mteR2 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
T [auth R]PF01280e6mteR1 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
U [auth S]F_UNCLASSIFIEDe6mteS2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
U [auth S]PF01775e6mteS1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
V [auth T]PF01157e6mteT1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
W [auth U]PF01776e6mteU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
X [auth V]PF00238e6mteV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
Y [auth W]PF01246e6mteW1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01246ECOD (1.6)
Z [auth X]PF00276,PF03939e6mteX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
AA [auth Y]PF16906e6mteY1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
BA [auth Z]PF00467,PF01777e6mteZ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01777ECOD (1.6)
CA [auth a]PF00828e6mtea1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
DA [auth b]PF01779e6mteb1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: PF01779ECOD (1.6)
EA [auth c]PF01248e6mtec1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
FA [auth d]PF01198e6mted1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
GA [auth e]PF01655e6mtee1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
HA [auth f]PF01247e6mtef1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
IA [auth g]PF01199e6mteg1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
JA [auth h]PF00831e6mteh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
KA [auth i]PF01158e6mtei1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
LA [auth j]PF01907e6mtej1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
MA [auth k]PF01781e6mtek1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
D [auth A]PF00181e6mteA2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
D [auth A]PF03947e6mteA1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
NA [auth l]PF00832e6mtel1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
OA [auth m]PF01020e6mtem1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01020ECOD (1.6)
PA [auth n]PF05162e6mten1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: PF05162ECOD (1.6)
QA [auth o]PF00935e6mteo1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00935ECOD (1.6)
RA [auth p]PF01780e6mtep1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
SA [auth r]PF01778e6mter1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: PF01778ECOD (1.6)
TA [auth s]PF00466e6mtes1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
TA [auth s]PF17777e6mtes2 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: PF17777ECOD (1.6)
UA [auth t]PF00298e6mtet1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
UA [auth t]PF03946e6mtet2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
VA [auth v]PF03144e6mtev3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF03144ECOD (1.6)
VA [auth v]PF03764e6mtev2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03764ECOD (1.6)
VA [auth v]PF00679e6mtev1 A: a+b two layersX: Alpha-beta plaitsH: EF-G C-terminal domain-like (From Topology)T: EF-G C-terminal domain-likeF: PF00679ECOD (1.6)
VA [auth v]PF14492e6mtev4 A: a+b two layersX: Alpha-beta plaitsH: EF-G C-terminal domain-like (From Topology)T: EF-G C-terminal domain-likeF: PF14492ECOD (1.6)
VA [auth v]PF00009e6mtev5 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00009ECOD (1.6)
E [auth B]PF00297e6mteB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
YA [auth AA]PF00318e6mteAA1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
ZA [auth BB]PF01015e6mteBB1 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: PF01015ECOD (1.6)
ZA [auth BB]PF01015e6mteBB2 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: PF01015ECOD (1.6)
AB [auth CC]PF03719e6mteCC3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
AB [auth CC]PF00333e6mteCC2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
AB [auth CC]PF00333e6mteCC1 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: PF00333ECOD (1.6)
BB [auth DD]PF00189e6mteDD2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
BB [auth DD]PF07650e6mteDD1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
CB [auth EE]PF00900e6mteEE2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
CB [auth EE]PF00467,PF16121e6mteEE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
CB [auth EE]PF00900,PF01479,PF08071e6mteEE3 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF01479,PF08071ECOD (1.6)
DB [auth FF]PF00177e6mteFF1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
EB [auth GG]PF01092e6mteGG1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)
FB [auth HH]PF01251e6mteHH1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)
GB [auth II]PF01201e6mteII1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)
F [auth C]PF00573e6mteC2 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
F [auth C]PF14374e6mteC1 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
HB [auth JJ]PF00163,PF01479e6mteJJ1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
IB [auth KK]PF03501e6mteKK1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03501ECOD (1.6)
JB [auth LL]PF00366,PF16205e6mteLL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
KB [auth MM]PF01248e6mteMM1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
LB [auth NN]PF08069e6mteNN1 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
LB [auth NN]PF00312e6mteNN2 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
MB [auth OO]PF00411e6mteOO1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
NB [auth PP]PF00203e6mtePP1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
OB [auth QQ]PF00380e6mteQQ1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
PB [auth RR]PF00833e6mteRR1 A: alpha arraysX: HTHH: HTHT: FF domainF: PF00833ECOD (1.6)
QB [auth SS]PF00416e6mteSS1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
G [auth D]PF14204,PF17144e6mteD1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
RB [auth TT]PF01090e6mteTT1 A: alpha arraysX: HTHH: HTHT: wingedF: PF01090ECOD (1.6)
SB [auth UU]PF00338e6mteUU1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
TB [auth VV]PF01249e6mteVV1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: PF01249ECOD (1.6)
UB [auth WW]PF00410e6mteWW2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
UB [auth WW]PF00410e6mteWW1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
VB [auth XX]PF00164e6mteXX1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
WB [auth YY]PF01282e6mteYY1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
XB [auth ZZ]PF03297e6mteZZ1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03297ECOD (1.6)
YB [auth aa]PF01283e6mteaa1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01283ECOD (1.6)
ZB [auth bb]PF01667e6mtebb1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01667ECOD (1.6)
AC [auth cc]PF01200e6mtecc1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
H [auth E]PF01159,PF03868e6mteE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159,PF03868ECOD (1.6)
BC [auth dd]PF00253e6mtedd1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
CC [auth ee]PF04758e6mteee1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: PF04758ECOD (1.6)
DC [auth ff]PF01599e6mteff1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01599ECOD (1.6)
EC [auth gg]PF00400e6mtegg1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
I [auth F]PF00327,PF08079e6mteF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
K [auth H]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
L [auth I]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
M [auth J]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
M [auth J]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
O [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
P [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
R [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
T [auth R]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
U [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
V [auth T]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
X [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
Z [auth X]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
Z [auth X]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
AA [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
AA [auth Y]PF00467KOW motif (KOW)KOW motif- Family
BA [auth Z]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
BA [auth Z]PF00467KOW motif (KOW)KOW motif- Family
CA [auth a]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
EA [auth c]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
FA [auth d]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
GA [auth e]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
HA [auth f]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
IA [auth g]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
JA [auth h]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
KA [auth i]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
LA [auth j]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
MA [auth k]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
D [auth A]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
D [auth A]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
NA [auth l]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
QA [auth o]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
RA [auth p]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
SA [auth r]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
TA [auth s]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1].Domain
TA [auth s]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
UA [auth t]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
UA [auth t]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
E [auth B]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
ZA [auth BB]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
AB [auth CC]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
AB [auth CC]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
BB [auth DD]PF07650KH domain (KH_2)KH domain- Domain
BB [auth DD]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
CB [auth EE]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
CB [auth EE]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
CB [auth EE]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
CB [auth EE]PF00467KOW motif (KOW)KOW motif- Family
DB [auth FF]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
EB [auth GG]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
FB [auth HH]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
GB [auth II]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
HB [auth JJ]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
HB [auth JJ]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
IB [auth KK]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
JB [auth LL]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
JB [auth LL]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
KB [auth MM]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
LB [auth NN]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
LB [auth NN]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
MB [auth OO]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
NB [auth PP]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
OB [auth QQ]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
PB [auth RR]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
QB [auth SS]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
G [auth D]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
G [auth D]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
SB [auth UU]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
TB [auth VV]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
UB [auth WW]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
VB [auth XX]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
WB [auth YY]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
XB [auth ZZ]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
YB [auth aa]PF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- Family
ZB [auth bb]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
AC [auth cc]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
H [auth E]PF03868Ribosomal protein L6, N-terminal domain (Ribosomal_L6e_N)Ribosomal protein L6, N-terminal domain- Domain
H [auth E]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
BC [auth dd]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
CC [auth ee]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
DC [auth ff]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
EC [auth gg]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
I [auth F]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
I [auth F]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 5]28S rRNA---
J [auth G]eL8---
K [auth H]uL6
L [auth I]uL16
M [auth J]uL5
N [auth L]eL13---
O [auth M]eL14
P [auth N]eL15
Q [auth O]uL13---
R [auth P]uL22
S [auth Q]eL18---
B [auth 7]5S rRNA---
T [auth R]eL19
U [auth S]eL20
V [auth T]eL21
W [auth U]eL22---
X [auth V]uL14
Y [auth W]eL24- - -
Z [auth X]uL23
AA [auth Y]uL24
BA [auth Z]eL27
CA [auth a]uL15
C [auth 8]5.8S rRNA---
DA [auth b]eL29---
EA [auth c]eL30 -
FA [auth d]eL31
GA [auth e]eL32
HA [auth f]eL33
IA [auth g]eL34
JA [auth h]uL29
KA [auth i]eL36
LA [auth j]eL37
MA [auth k]eL38
D [auth A]uL2
NA [auth l]eL39
OA [auth m]eL40---
PA [auth n]eL41---
QA [auth o]eL42
RA [auth p]eL43
SA [auth r]eL28
TA [auth s]uL10
UA [auth t]uL11
VA [auth v]eEF2---
WA [auth w]SERBP1---
E [auth B]uL3
XA [auth 9]18S rRNA---
YA [auth AA]uS2---
ZA [auth BB]eS1
AB [auth CC]uS5
BB [auth DD]uS3
CB [auth EE]eS4
DB [auth FF]uS7
EB [auth GG]eS6
FB [auth HH]eS7
GB [auth II]eS8
F [auth C]uL4---
HB [auth JJ]uS4
IB [auth KK]eS10- - -
JB [auth LL]uS17
KB [auth MM]eS12
LB [auth NN]uS15
MB [auth OO]uS11
NB [auth PP]uS19
OB [auth QQ]uS9
PB [auth RR]eS17
QB [auth SS]uS13
G [auth D]uL18
RB [auth TT]eS19---
SB [auth UU]uS10
TB [auth VV]eS21
UB [auth WW]uS8
VB [auth XX]uS12
WB [auth YY]eS24
XB [auth ZZ]eS25- -
YB [auth aa]eS26
ZB [auth bb]eS27
AC [auth cc]eS28
H [auth E]eL6
BC [auth dd]uS14
CC [auth ee]eS30
DC [auth ff]eS31
EC [auth gg]RACK1
I [auth F]uL30

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
K [auth H]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
K [auth H]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
K [auth H]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
K [auth H]IPR000702Large ribosomal subunit protein uL6-likeFamily
L [auth I]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
L [auth I]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
L [auth I]IPR016180Large ribosomal subunit protein uL16 domainDomain
L [auth I]IPR047873Large ribosomal subunit protein uL16Family
L [auth I]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
M [auth J]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
M [auth J]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
M [auth J]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
M [auth J]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
M [auth J]IPR002132Large ribosomal subunit protein uL5Family
O [auth M]IPR039660Large ribosomal subunit protein eL14Family
O [auth M]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
O [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
O [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
O [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
P [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
P [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
P [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
P [auth N]IPR000439Large ribosomal subunit protein eL15Family
R [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
R [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
R [auth P]IPR001063Large ribosomal subunit protein uL22Family
R [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
T [auth R]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
T [auth R]IPR039547Large ribosomal subunit protein eL19Family
T [auth R]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
T [auth R]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
T [auth R]IPR000196Large ribosomal subunit protein eL19 domainDomain
T [auth R]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
U [auth S]IPR028877Large ribosomal subunit protein eL20Family
U [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
U [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
V [auth T]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
V [auth T]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
V [auth T]IPR001147Large ribosomal subunit protein eL21Family
V [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
X [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
X [auth V]IPR000218Large ribosomal subunit protein uL14Family
Y [auth W]IPR011017TRASH domainDomain
Y [auth W]IPR000988Large ribosomal subunit protein eL24-relatedFamily
Y [auth W]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
Y [auth W]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
Z [auth X]IPR019985Large ribosomal subunit protein uL23Family
Z [auth X]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
Z [auth X]IPR013025Large ribosomal subunit protein uL23-likeFamily
Z [auth X]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Z [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
Z [auth X]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
AA [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
AA [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
AA [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
AA [auth Y]IPR005824KOWDomain
AA [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
BA [auth Z]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
BA [auth Z]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
BA [auth Z]IPR005824KOWDomain
BA [auth Z]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BA [auth Z]IPR001141Large ribosomal subunit protein eL27Family
BA [auth Z]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
CA [auth a]IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
CA [auth a]IPR021131Large ribosomal subunit protein uL15/eL18Domain
CA [auth a]IPR030878Large ribosomal subunit protein uL15Family
CA [auth a]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
CA [auth a]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
EA [auth c]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
EA [auth c]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
EA [auth c]IPR000231Large ribosomal subunit protein eL30Family
EA [auth c]IPR039109Large ribosomal subunit protein eL30-likeFamily
EA [auth c]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
FA [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
FA [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
FA [auth d]IPR000054Large ribosomal subunit protein eL31Family
GA [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
GA [auth e]IPR001515Large ribosomal subunit protein eL32Family
GA [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
HA [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
HA [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
HA [auth f]IPR001780Large ribosomal subunit protein eL33Family
HA [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
IA [auth g]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
IA [auth g]IPR008195Large ribosomal subunit protein eL34Family
JA [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
JA [auth h]IPR001854Large ribosomal subunit protein uL29Family
JA [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
JA [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
KA [auth i]IPR000509Large ribosomal subunit protein eL36Family
KA [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
LA [auth j]IPR001569Large ribosomal subunit protein eL37Family
LA [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
LA [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
LA [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
MA [auth k]IPR002675Large ribosomal subunit protein eL38Family
MA [auth k]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
D [auth A]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
D [auth A]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
D [auth A]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
D [auth A]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
D [auth A]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
D [auth A]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
D [auth A]IPR002171Large ribosomal subunit protein uL2Family
NA [auth l]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
NA [auth l]IPR000077Large ribosomal subunit protein eL39Family
NA [auth l]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
QA [auth o]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
QA [auth o]IPR000552Large ribosomal subunit protein eL42Family
RA [auth p]IPR002674Large ribosomal subunit protein eL43Family
RA [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
RA [auth p]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
SA [auth r]IPR029004Ribosomal eL28/Mak16Domain
SA [auth r]IPR002672Large ribosomal subunit protein eL28Family
TA [auth s]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
TA [auth s]IPR001790Large ribosomal subunit protein uL10Family
TA [auth s]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
TA [auth s]IPR030670Large ribosomal subunit protein uL10, eukaryotesFamily
TA [auth s]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
UA [auth t]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
UA [auth t]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
UA [auth t]IPR000911Ribosomal protein uL11Family
UA [auth t]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
UA [auth t]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
UA [auth t]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
E [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
E [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
E [auth B]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
E [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
E [auth B]IPR000597Large ribosomal subunit protein uL3Family
ZA [auth BB]IPR001593Small ribosomal subunit protein eS1Family
ZA [auth BB]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
ZA [auth BB]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
AB [auth CC]IPR000851Small ribosomal subunit protein uS5Family
AB [auth CC]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
AB [auth CC]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
AB [auth CC]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
AB [auth CC]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
AB [auth CC]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
AB [auth CC]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
BB [auth DD]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
BB [auth DD]IPR004044K Homology domain, type 2Domain
BB [auth DD]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
BB [auth DD]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
BB [auth DD]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
BB [auth DD]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
BB [auth DD]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
CB [auth EE]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
CB [auth EE]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
CB [auth EE]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
CB [auth EE]IPR002942RNA-binding S4 domainDomain
CB [auth EE]IPR013845Small ribosomal subunit protein eS4, central regionDomain
CB [auth EE]IPR000876Small ribosomal subunit protein eS4Family
CB [auth EE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
CB [auth EE]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
CB [auth EE]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
CB [auth EE]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
CB [auth EE]IPR005824KOWDomain
DB [auth FF]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
DB [auth FF]IPR000235Small ribosomal subunit protein uS7Family
DB [auth FF]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
DB [auth FF]IPR023798Small ribosomal subunit protein uS7 domainDomain
DB [auth FF]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
EB [auth GG]IPR014401Small ribosomal subunit protein eS6-likeFamily
EB [auth GG]IPR001377Small ribosomal subunit protein eS6Family
EB [auth GG]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
FB [auth HH]IPR000554Small ribosomal subunit protein eS7Family
FB [auth HH]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
GB [auth II]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
GB [auth II]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
GB [auth II]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
GB [auth II]IPR001047Small ribosomal subunit protein eS8Family
HB [auth JJ]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
HB [auth JJ]IPR002942RNA-binding S4 domainDomain
HB [auth JJ]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
HB [auth JJ]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
HB [auth JJ]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
HB [auth JJ]IPR022801Small ribosomal subunit protein uS4Family
IB [auth KK]IPR037447Small ribosomal subunit protein eS10Family
IB [auth KK]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
IB [auth KK]IPR005326Plectin/eS10, N-terminalDomain
JB [auth LL]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
JB [auth LL]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
JB [auth LL]IPR000266Small ribosomal subunit protein uS17Family
JB [auth LL]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
JB [auth LL]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
KB [auth MM]IPR000530Small ribosomal subunit protein eS12Family
KB [auth MM]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
KB [auth MM]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
KB [auth MM]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
LB [auth NN]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
LB [auth NN]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
LB [auth NN]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
LB [auth NN]IPR000589Small ribosomal subunit protein uS15Family
MB [auth OO]IPR001971Small ribosomal subunit protein uS11Family
MB [auth OO]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
MB [auth OO]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
NB [auth PP]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
NB [auth PP]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
NB [auth PP]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
NB [auth PP]IPR002222Small ribosomal subunit protein uS19Family
OB [auth QQ]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
OB [auth QQ]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
OB [auth QQ]IPR000754Small ribosomal subunit protein uS9Family
OB [auth QQ]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
PB [auth RR]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
PB [auth RR]IPR001210Small ribosomal subunit protein eS17Family
PB [auth RR]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
QB [auth SS]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
QB [auth SS]IPR001892Small ribosomal subunit protein uS13Family
QB [auth SS]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
QB [auth SS]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
G [auth D]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
G [auth D]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
SB [auth UU]IPR001848Small ribosomal subunit protein uS10Family
SB [auth UU]IPR027486Small ribosomal subunit protein uS10 domainDomain
SB [auth UU]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
SB [auth UU]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
SB [auth UU]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
TB [auth VV]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
TB [auth VV]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
TB [auth VV]IPR001931Small ribosomal subunit protein eS21Family
UB [auth WW]IPR000630Small ribosomal subunit protein uS8Family
UB [auth WW]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
UB [auth WW]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
VB [auth XX]IPR006032Small ribosomal subunit protein uS12Family
VB [auth XX]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
VB [auth XX]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
WB [auth YY]IPR001976Small ribosomal subunit protein eS24Family
WB [auth YY]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
WB [auth YY]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
XB [auth ZZ]IPR004977Small ribosomal subunit protein eS25Family
XB [auth ZZ]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
YB [auth aa]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
YB [auth aa]IPR000892Small ribosomal subunit protein eS26Family
YB [auth aa]IPR047864Ribosomal protein eS26, conserved siteConserved Site
ZB [auth bb]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
ZB [auth bb]IPR000592Small ribosomal subunit protein eS27Family
ZB [auth bb]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
AC [auth cc]IPR028626Ribosomal protein eS28 conserved siteConserved Site
AC [auth cc]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
AC [auth cc]IPR000289Small ribosomal subunit protein eS28Family
H [auth E]IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
H [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
H [auth E]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
H [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
H [auth E]IPR000915Large ribosomal subunit protein eL6Family
BC [auth dd]IPR001209Small ribosomal subunit protein uS14Family
BC [auth dd]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
BC [auth dd]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
BC [auth dd]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
CC [auth ee]IPR039415Ubiquitin-like protein FUBIDomain
CC [auth ee]IPR019956Ubiquitin domainDomain
CC [auth ee]IPR019954Ubiquitin conserved siteConserved Site
CC [auth ee]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
CC [auth ee]IPR000626Ubiquitin-like domainDomain
CC [auth ee]IPR006846Small ribosomal subunit protein eS30Family
DC [auth ff]IPR002906Small ribosomal subunit protein eS31Domain
DC [auth ff]IPR019956Ubiquitin domainDomain
DC [auth ff]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
DC [auth ff]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
DC [auth ff]IPR000626Ubiquitin-like domainDomain
DC [auth ff]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
EC [auth gg]IPR019775WD40 repeat, conserved siteConserved Site
EC [auth gg]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
EC [auth gg]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
EC [auth gg]IPR045223Small ribosomal subunit protein RACK1-likeFamily
EC [auth gg]IPR001680WD40 repeatRepeat
EC [auth gg]IPR020472G-protein beta WD-40 repeatRepeat
I [auth F]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
I [auth F]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
I [auth F]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
I [auth F]IPR039699Large ribosomal subunit protein uL30Family
I [auth F]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
I [auth F]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
I [auth F]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A [auth 5]1MA Parent Component: A

A [auth 5]2MG Parent Component: G

A [auth 5]5MC Parent Component: C

A [auth 5]5MU Parent Component: U

A [auth 5]6MZ Parent Component: A

A [auth 5]7MG Parent Component: G

A [auth 5]A2M Parent Component: A

A [auth 5]B8H Parent Component: U

A [auth 5]B8K Parent Component: G

A [auth 5]B8Q Parent Component: C

A [auth 5]B8T Parent Component: C

A [auth 5]B8W Parent Component: G

A [auth 5]B9B Parent Component: G

A [auth 5]B9H Parent Component: C

A [auth 5]BGH Parent Component: G

A [auth 5]E6G Parent Component: G

A [auth 5]E7G Parent Component: G

A [auth 5]I4U Parent Component: U

A [auth 5]M7A Parent Component: A

A [auth 5]MHG Parent Component: G

A [auth 5]OMC Parent Component: C

A [auth 5]OMG Parent Component: G

A [auth 5]OMU Parent Component: U

A [auth 5]P4U Parent Component: U

A [auth 5]P7G Parent Component: G

A [auth 5]PSU Parent Component: U

A [auth 5]UR3 Parent Component: U

C [auth 8]OMU Parent Component: U

OA [auth m]MLZ Parent Component: LYS

RESIDAA0076

PSI-MOD :  N6-methyl-L-lysine MOD:00085
VA [auth v]DDE Parent Component: HIS

RESIDAA0076 , AA0040

PSI-MOD :  N6-methyl-L-lysine MOD:00085 , 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine MOD:00049
XA [auth 9]4AC RESIDAA0076 , AA0040

XA [auth 9]5MC Parent Component: C

RESIDAA0076 , AA0040

XA [auth 9]5MU Parent Component: U

RESIDAA0076 , AA0040

XA [auth 9]6MZ Parent Component: A

RESIDAA0076 , AA0040

XA [auth 9]A2M Parent Component: A

RESIDAA0076 , AA0040

XA [auth 9]B8N RESIDAA0076 , AA0040

XA [auth 9]B8Q Parent Component: C

XA [auth 9]E3C Parent Component: C

XA [auth 9]M7A Parent Component: A

RESIDAA0076 , AA0040

XA [auth 9]MA6 Parent Component: A

RESIDAA0076 , AA0040

XA [auth 9]OMC Parent Component: C

RESIDAA0076 , AA0040

XA [auth 9]OMG Parent Component: G

RESIDAA0076 , AA0040

XA [auth 9]OMU Parent Component: U

RESIDAA0076 , AA0040

XA [auth 9]PSU Parent Component: U

RESIDAA0076 , AA0040

XA [auth 9]UR3 Parent Component: U

RESIDAA0076 , AA0040

F [auth C]MLZ Parent Component: LYS

RESIDAA0076 , AA0040 , AA0076

PSI-MOD :  N6-methyl-L-lysine MOD:00085 , 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine MOD:00049 , N6-methyl-L-lysine MOD:00085