6N8L

Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
O [auth g]SCOP2B SuperfamilyRibosomal protein L34e-like8053547 3002203 SCOP2B (2022-06-29)
S [auth i]SCOP2B SuperfamilyRibosomal protein L36e8053115 3002161 SCOP2B (2022-06-29)
J [auth E]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053109 3000334 SCOP2B (2022-06-29)
L [auth F]SCOP2B SuperfamilyRibosomal protein L30p/L7e8052917 3001378 SCOP2B (2022-06-29)
L [auth F]SCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke8052916 3002152 SCOP2B (2022-06-29)
M [auth f]SCOP2B SuperfamilyTranslational proteins8087451 3000811 SCOP2B (2022-06-29)
N [auth G]SCOP2B SuperfamilyL30e-like8063962 3001739 SCOP2B (2022-06-29)
T [auth j]SCOP2B SuperfamilyZn-binding ribosomal proteins8080044 3001320 SCOP2B (2022-06-29)
U [auth k]SCOP2B SuperfamilyRibosomal L38e protein-like8053562 3002206 SCOP2B (2022-06-29)
V [auth L]SCOP2B SuperfamilyRibosomal protein L13e-like8053159 3002162 SCOP2B (2022-06-29)
W [auth l]SCOP2B SuperfamilyRibosomal protein L39e8078549 3001756 SCOP2B (2022-06-29)
Y [auth p]SCOP2B SuperfamilyZn-binding ribosomal proteins8103126 3001320 SCOP2B (2022-06-29)
Z [auth N]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082481 3000210 SCOP2B (2022-06-29)
BA [auth O]SCOP2B SuperfamilyRibosomal protein L138066053 3001134 SCOP2B (2022-06-29)
CA [auth P]SCOP2B SuperfamilyRibosomal protein L228076708 3001078 SCOP2B (2022-06-29)
DA [auth Q]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8095970 3001045 SCOP2B (2022-06-29)
EA [auth R]SCOP2B SuperfamilyRibosomal protein L19 (L19e)8077485 3000890 SCOP2B (2022-06-29)
HA [auth U]SCOP2B Superfamily60S Ribosomal protein L22e8053058 3002158 SCOP2B (2022-06-29)
IA [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like8103364 3000433 SCOP2B (2022-06-29)
KA [auth X]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095962 3000210 SCOP2B (2022-06-29)
LA [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076760 3000334 SCOP2B (2022-06-29)
MA [auth y]SCOP2B SuperfamilyPentein8036230 3000640 SCOP2B (2022-06-29)
NA [auth Z]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053046 3000334 SCOP2B (2022-06-29)
PA [auth D]SCOP2B SuperfamilyTranslational machinery components8052875 3000571 SCOP2B (2022-06-29)
QA [auth J]SCOP2B SuperfamilyRL5-like8073884 3001709 SCOP2B (2022-06-29)
SA [auth o]SCOP2B SuperfamilyRibosomal protein L29e8053045 3002157 SCOP2B (2022-06-29)
E [auth B]SCOP2B SuperfamilyTranslational proteins8078363 3000811 SCOP2B (2022-06-29)
G [auth C]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like8052815 3002143 SCOP2B (2022-06-29)
G [auth C]SCOP2B SuperfamilyRibosomal protein L48052816 3001146 SCOP2B (2022-06-29)
H [auth c]SCOP2B SuperfamilyL30e-like8039862 3001739 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
O [auth g]Ribosomal_L34ee6n8lg1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: Ribosomal_L34eECOD (1.6)
P [auth I]zf-C2H2_jaze6n8lI1 A: few secondary structure elementsX: beta-beta-alpha zinc fingersH: beta-beta-alpha zinc fingers (From Topology)T: beta-beta-alpha zinc fingersF: zf-C2H2_jazECOD (1.6)
S [auth i]Ribosomal_L36ee6n8li1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: Ribosomal_L36eECOD (1.6)
J [auth E]Ribosomal_L6ee6n8lE1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L6eECOD (1.6)
K [auth e]Ribosomal_L32ee6n8le1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: Ribosomal_L32eECOD (1.6)
L [auth F]Ribosomal_L30_1e6n8lF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30_1ECOD (1.6)
M [auth f]Ribosomal_L35Aee6n8lf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L35AeECOD (1.6)
N [auth G]Ribosomal_L7Ae_1e6n8lG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
Q [auth H]Ribosomal_L6_2e6n8lH1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_2ECOD (1.6)
Q [auth H]Ribosomal_L6e6n8lH2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
R [auth h]Ribosomal_L29_2e6n8lh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29_2ECOD (1.6)
T [auth j]Ribosomal_L37ee6n8lj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37eECOD (1.6)
U [auth k]Ribosomal_L38ee6n8lk1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: Ribosomal_L38eECOD (1.6)
V [auth L]Ribosomal_L13ee6n8lL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: Ribosomal_L13eECOD (1.6)
W [auth l]Ribosomal_L39e6n8ll1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: Ribosomal_L39ECOD (1.6)
X [auth M]Ribosomal_L14ee6n8lM1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L14eECOD (1.6)
Y [auth p]Ribosomal_L37aee6n8lp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37aeECOD (1.6)
Z [auth N]Ribosomal_L15ee6n8lN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L15eECOD (1.6)
BA [auth O]Ribosomal_L13e6n8lO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
CA [auth P]Ribosomal_L22e6n8lP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
C [auth A]Ribosomal_L2_1e6n8lA1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
C [auth A]Ribosomal_L2_C_2e6n8lA2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_C_2ECOD (1.6)
DA [auth Q]Ribosomal_L18e6n8lQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
EA [auth R]Ribosomal_L19e_Ne6n8lR1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: Ribosomal_L19e_NECOD (1.6)
EA [auth R]Ribosomal_L19e_Ce6n8lR2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: Ribosomal_L19e_CECOD (1.6)
FA [auth S]Ribosomal_L18Ae6n8lS1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: Ribosomal_L18AECOD (1.6)
HA [auth U]Ribosomal_L22ee6n8lU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: Ribosomal_L22eECOD (1.6)
IA [auth V]Ribosomal_L14e6n8lV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
JA [auth W]Ribosomal_L10e6n8lW1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)
KA [auth X]Ribosomal_L23_3e6n8lX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_3ECOD (1.6)
LA [auth Y]Ribosomal_L26e6n8lY1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L26ECOD (1.6)
MA [auth y]eIF-6e6n8ly1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: eIF-6ECOD (1.6)
D [auth a]Ribosomal_L18e6n8la1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
NA [auth Z]Ribosomal_L27ee6n8lZ1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L27eECOD (1.6)
PA [auth D]Ribosomal_L5ee6n8lD1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L5eECOD (1.6)
QA [auth J]Ribosomal_L5_Ce6n8lJ1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
RA [auth q]Ribosomal_L44e6n8lq1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L44ECOD (1.6)
SA [auth o]Ribosomal_L29ee6n8lo1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: Ribosomal_L29eECOD (1.6)
E [auth B]Ribosomal_L3e6n8lB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
G [auth C]Ribosomal_L4e6n8lC3 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
G [auth C]Ribos_L4_asso_Ce6n8lC2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: Ribos_L4_asso_CECOD (1.6)
H [auth c]Ribosomal_L7Aee6n8lc1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
I [auth d]Ribosomal_L31ee6n8ld1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: Ribosomal_L31eECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F [auth b]PF08155NOGCT (NUC087) domain (NOGCT)NOGCT (NUC087) domainThis C terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [1].Domain
O [auth g]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
P [auth I]PF12171Zinc-finger double-stranded RNA-binding (zf-C2H2_jaz)Zinc-finger double-stranded RNA-binding- Family
S [auth i]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
A [auth v]PF21192NMD3 OB-fold domain (NMD3_OB)NMD3 OB-fold domainA key step in ribosome biogenesis is the nuclear export of pre-ribosomal particles. Nmd3, a highly conserved protein in eukaryotes, is a specific adaptor required for the export of pre-60S particles. This entry represents the third domain in NMD3 whi ...A key step in ribosome biogenesis is the nuclear export of pre-ribosomal particles. Nmd3, a highly conserved protein in eukaryotes, is a specific adaptor required for the export of pre-60S particles. This entry represents the third domain in NMD3 which adopts an OB-fold [1]. The OB of Nmd3 does not recognise 25S rRNA. Instead it interacts with two ribosomal proteins, eL42 and uL1 [1].
Domain
A [auth v]PF04981NMD3 family (NMD3)NMD3 family- Family
A [auth v]PF21193NMD3 SH3 domain (NMD_SH3)NMD3 SH3 domainA key step in ribosome biogenesis is the nuclear export of pre-ribosomal particles. Nmd3, a highly conserved protein in eukaryotes, is a specific adaptor required for the export of pre-60S particles. This entry represents the second domain in NMD3 wh ...A key step in ribosome biogenesis is the nuclear export of pre-ribosomal particles. Nmd3, a highly conserved protein in eukaryotes, is a specific adaptor required for the export of pre-60S particles. This entry represents the second domain in NMD3 which adopts an SH3-fold denoted as RBDII in [1]. The two short alpha-helices in RBDII participate in rRNA recognition [1].
Domain
J [auth E]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
K [auth e]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
L [auth F]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
L [auth F]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
M [auth f]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
N [auth G]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
Q [auth H]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
R [auth h]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
T [auth j]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
U [auth k]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
V [auth L]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
W [auth l]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
X [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
X [auth M]PF00467KOW motif (KOW)KOW motif- Family
Y [auth p]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
Z [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
AA [auth u]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
BA [auth O]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
CA [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
C [auth A]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
C [auth A]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
DA [auth Q]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
EA [auth R]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
FA [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
GA [auth T]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
HA [auth U]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
IA [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
JA [auth W]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
KA [auth X]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
KA [auth X]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
LA [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
LA [auth Y]PF00467KOW motif (KOW)KOW motif- Family
MA [auth y]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
D [auth a]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
NA [auth Z]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
OA [auth z]PF10338Protein of unknown function (DUF2423) (DUF2423)Protein of unknown function (DUF2423)- Family
PA [auth D]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
PA [auth D]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
QA [auth J]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
QA [auth J]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
RA [auth q]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
SA [auth o]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
E [auth B]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
G [auth C]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
G [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
H [auth c]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
I [auth d]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F [auth b]Nucleolar GTP-binding protein 1
O [auth g]60S ribosomal protein L34-A
P [auth I]Bud site selection protein 20
S [auth i]60S ribosomal protein L36-A
A [auth v]60S ribosomal export protein NMD3
J [auth E]60S ribosomal protein L6-A
K [auth e]60S ribosomal protein L32
L [auth F]60S ribosomal protein L7-A
M [auth f]60S ribosomal protein L33-A
N [auth G]60S ribosomal protein L8-A
Q [auth H]60S ribosomal protein L9-A
R [auth h]60S ribosomal protein L35-A
B [auth s]Ribosomal Protein uL1---
T [auth j]60S ribosomal protein L37-A
U [auth k]60S ribosomal protein L38
V [auth L]60S ribosomal protein L13-A
W [auth l]60S ribosomal protein L39
X [auth M]60S ribosomal protein L14-A
Y [auth p]60S ribosomal protein L43-A
Z [auth N]60S ribosomal protein L15-A
AA [auth u]Ribosome biogenesis protein RLP24
BA [auth O]60S ribosomal protein L16-A
CA [auth P]60S ribosomal protein L17-A
C [auth A]60S ribosomal protein L2-A
DA [auth Q]60S ribosomal protein L18-A
EA [auth R]60S ribosomal protein L19-A
FA [auth S]60S ribosomal protein L20-A
GA [auth T]60S ribosomal protein L21-A
HA [auth U]60S ribosomal protein L22-A
IA [auth V]60S ribosomal protein L23-A
JA [auth W]Ribosome assembly factor MRT4
KA [auth X]60S ribosomal protein L25
LA [auth Y]60S ribosomal protein L26-A
MA [auth y]Eukaryotic translation initiation factor 6
D [auth a]60S ribosomal protein L28
NA [auth Z]60S ribosomal protein L27-A
OA [auth z]UPF0642 protein YBL028C- -
PA [auth D]60S ribosomal protein L5
QA [auth J]60S ribosomal protein L11-A
RA [auth q]60S ribosomal protein L42-A
SA [auth o]60S ribosomal protein L29
TA [auth 1]Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA---
UA [auth 2]5S rRNA---
VA [auth 3]5.8S rRNA---
E [auth B]60S ribosomal protein L3
G [auth C]60S ribosomal protein L4-A
H [auth c]60S ribosomal protein L30
I [auth d]60S ribosomal protein L31-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth b]IPR024926Nucleolar GTP-binding protein 1Family
F [auth b]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
F [auth b]IPR012973NOG, C-terminalDomain
F [auth b]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
F [auth b]IPR041623NOG1, N-terminal helical domainDomain
F [auth b]IPR006073GTP binding domainDomain
F [auth b]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
O [auth g]IPR008195Large ribosomal subunit protein eL34Family
O [auth g]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
P [auth I]IPR003604Matrin/U1-C-like, C2H2-type zinc fingerDomain
P [auth I]IPR013087Zinc finger C2H2-typeDomain
P [auth I]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
P [auth I]IPR022755Zinc finger, double-stranded RNA bindingDomain
S [auth i]IPR000509Large ribosomal subunit protein eL36Family
S [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
A [auth v]IPR007064Nmd3, N-terminalDomain
A [auth v]IPR039768Ribosomal export protein Nmd3Family
A [auth v]IPR04889960S ribosomal export protein NMD3, SH3 domainDomain
A [auth v]IPR04889860S ribosomal export protein NMD3, OB-fold domainDomain
J [auth E]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
J [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
J [auth E]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
J [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
J [auth E]IPR000915Large ribosomal subunit protein eL6Family
K [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
K [auth e]IPR001515Large ribosomal subunit protein eL32Family
K [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
L [auth F]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
L [auth F]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
L [auth F]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
L [auth F]IPR039699Large ribosomal subunit protein uL30Family
L [auth F]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
L [auth F]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
L [auth F]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
M [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
M [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
M [auth f]IPR001780Large ribosomal subunit protein eL33Family
M [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
N [auth G]IPR001921Large ribosomal subunit protein eL8Family
N [auth G]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
N [auth G]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
N [auth G]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
N [auth G]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
Q [auth H]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
Q [auth H]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
Q [auth H]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
Q [auth H]IPR000702Large ribosomal subunit protein uL6-likeFamily
R [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
R [auth h]IPR001854Large ribosomal subunit protein uL29Family
R [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
R [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
T [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
T [auth j]IPR001569Large ribosomal subunit protein eL37Family
T [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
T [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
U [auth k]IPR002675Large ribosomal subunit protein eL38Family
U [auth k]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
V [auth L]IPR001380Large ribosomal subunit protein eL13Family
V [auth L]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
W [auth l]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
W [auth l]IPR000077Large ribosomal subunit protein eL39Family
W [auth l]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
X [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
X [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth M]IPR039660Large ribosomal subunit protein eL14Family
X [auth M]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
X [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
X [auth M]IPR005824KOWDomain
Y [auth p]IPR002674Large ribosomal subunit protein eL43Family
Y [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Y [auth p]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
Z [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Z [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
Z [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
Z [auth N]IPR000439Large ribosomal subunit protein eL15Family
AA [auth u]IPR011017TRASH domainDomain
AA [auth u]IPR000988Large ribosomal subunit protein eL24-relatedFamily
AA [auth u]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
BA [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
BA [auth O]IPR005822Large ribosomal subunit protein uL13Family
BA [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
BA [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
CA [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
CA [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
CA [auth P]IPR001063Large ribosomal subunit protein uL22Family
CA [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
C [auth A]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
C [auth A]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
C [auth A]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
C [auth A]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
C [auth A]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth A]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
C [auth A]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
C [auth A]IPR002171Large ribosomal subunit protein uL2Family
DA [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
DA [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
DA [auth Q]IPR000039Large ribosomal subunit protein eL18Family
DA [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
EA [auth R]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
EA [auth R]IPR039547Large ribosomal subunit protein eL19Family
EA [auth R]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
EA [auth R]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
EA [auth R]IPR000196Large ribosomal subunit protein eL19 domainDomain
EA [auth R]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
FA [auth S]IPR028877Large ribosomal subunit protein eL20Family
FA [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
FA [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
GA [auth T]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
GA [auth T]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
GA [auth T]IPR001147Large ribosomal subunit protein eL21Family
GA [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
HA [auth U]IPR002671Large ribosomal subunit protein eL22Family
HA [auth U]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
IA [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
IA [auth V]IPR000218Large ribosomal subunit protein uL14Family
IA [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
JA [auth W]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
JA [auth W]IPR001790Large ribosomal subunit protein uL10Family
JA [auth W]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
JA [auth W]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
JA [auth W]IPR033867Ribosome assembly factor Mrt4Family
KA [auth X]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
KA [auth X]IPR013025Large ribosomal subunit protein uL23-likeFamily
KA [auth X]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
KA [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
KA [auth X]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
LA [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
LA [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
LA [auth Y]IPR005824KOWDomain
LA [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
LA [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
LA [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
MA [auth y]IPR002769Translation initiation factor IF6Family
D [auth a]IPR021131Large ribosomal subunit protein uL15/eL18Domain
D [auth a]IPR030878Large ribosomal subunit protein uL15Family
D [auth a]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
D [auth a]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
NA [auth Z]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
NA [auth Z]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
NA [auth Z]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
NA [auth Z]IPR001141Large ribosomal subunit protein eL27Family
NA [auth Z]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
OA [auth z]IPR019434Domain of unknown function DUF2423Domain
PA [auth D]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
PA [auth D]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
QA [auth J]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
QA [auth J]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
QA [auth J]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
QA [auth J]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
QA [auth J]IPR002132Large ribosomal subunit protein uL5Family
RA [auth q]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
RA [auth q]IPR000552Large ribosomal subunit protein eL42Family
SA [auth o]IPR002673Large ribosomal subunit protein eL29Family
E [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
E [auth B]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
E [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
E [auth B]IPR000597Large ribosomal subunit protein uL3Family
E [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
G [auth C]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
G [auth C]IPR002136Large ribosomal subunit protein uL4Family
G [auth C]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
G [auth C]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
G [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
H [auth c]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
H [auth c]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
H [auth c]IPR039109Large ribosomal subunit protein eL30-likeFamily
H [auth c]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
I [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
I [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
I [auth d]IPR000054Large ribosomal subunit protein eL31Family