6CRU

CryoEM structure of human enterovirus D68 emptied particle (pH 7.2 and 4 degrees Celsius)


ChainDomainClassArchitectureTopologyHomology
2.60.120.20 Mainly Beta Sandwich Jelly Rolls
2.60.120.20 Mainly Beta Sandwich Jelly Rolls
2.60.120.20 Mainly Beta Sandwich Jelly Rolls

Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
PF00910RNA helicase (RNA_helicase)RNA helicaseThis family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.Domain
PF005483C cysteine protease (picornain 3C) (Peptidase_C3)3C cysteine protease (picornain 3C)- Family
PF00947Picornavirus core protein 2A (Pico_P2A)Picornavirus core protein 2AThis protein is a protease, involved in cleavage of the polyprotein.Domain
PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
PF00680Viral RNA-dependent RNA polymerase (RdRP_1)Viral RNA-dependent RNA polymerase- Family
PF08727Poliovirus 3A protein like (P3A)Poliovirus 3A protein likeThis domain is found in positive-strand RNA viruses. The 3A protein is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport.Domain
PF01552Picornavirus 2B protein (Pico_P2B)Picornavirus 2B protein- Family
PF02226Picornavirus coat protein (VP4) (Pico_P1A)Picornavirus coat protein (VP4)- Family
PF00910RNA helicase (RNA_helicase)RNA helicaseThis family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.Domain
PF005483C cysteine protease (picornain 3C) (Peptidase_C3)3C cysteine protease (picornain 3C)- Family
PF00947Picornavirus core protein 2A (Pico_P2A)Picornavirus core protein 2AThis protein is a protease, involved in cleavage of the polyprotein.Domain
PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
PF00680Viral RNA-dependent RNA polymerase (RdRP_1)Viral RNA-dependent RNA polymerase- Family
PF08727Poliovirus 3A protein like (P3A)Poliovirus 3A protein likeThis domain is found in positive-strand RNA viruses. The 3A protein is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport.Domain
PF01552Picornavirus 2B protein (Pico_P2B)Picornavirus 2B protein- Family
PF02226Picornavirus coat protein (VP4) (Pico_P1A)Picornavirus coat protein (VP4)- Family
PF00910RNA helicase (RNA_helicase)RNA helicaseThis family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.Domain
PF005483C cysteine protease (picornain 3C) (Peptidase_C3)3C cysteine protease (picornain 3C)- Family
PF00947Picornavirus core protein 2A (Pico_P2A)Picornavirus core protein 2AThis protein is a protease, involved in cleavage of the polyprotein.Domain
PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
PF00680Viral RNA-dependent RNA polymerase (RdRP_1)Viral RNA-dependent RNA polymerase- Family
PF08727Poliovirus 3A protein like (P3A)Poliovirus 3A protein likeThis domain is found in positive-strand RNA viruses. The 3A protein is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport.Domain
PF01552Picornavirus 2B protein (Pico_P2B)Picornavirus 2B protein- Family
PF02226Picornavirus coat protein (VP4) (Pico_P1A)Picornavirus coat protein (VP4)- Family

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
viral protein 1
viral protein 3
viral protein 2