8AYO | pdb_00008ayo

Open state GluA1/A2 AMPA receptor in complex with TARP gamma 8 and ligand JNJ-61432059

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth B]SCOP2B SuperfamilyType 2 solute binding protein-like 8036483 3000083 SCOP2B (2022-06-29)
B [auth D]SCOP2B SuperfamilyType 2 solute binding protein-like 8036483 3000083 SCOP2B (2022-06-29)
E [auth J]SCOP2B SuperfamilyClaudin-like 8094098 3002606 SCOP2B (2022-06-29)
D [auth I]SCOP2B SuperfamilyClaudin-like 8094098 3002606 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
F [auth B]F_UNCLASSIFIEDe8ayoB1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: F_UNCLASSIFIEDECOD (1.6)
F [auth B]F_UNCLASSIFIEDe8ayoB2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: F_UNCLASSIFIEDECOD (1.6)
B [auth D]F_UNCLASSIFIEDe8ayoD2 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: F_UNCLASSIFIEDECOD (1.6)
B [auth D]F_UNCLASSIFIEDe8ayoD1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: F_UNCLASSIFIEDECOD (1.6)
E [auth J]F_UNCLASSIFIEDe8ayoJ1 A: alpha bundlesX: Bromodomain-likeH: Claudin (From Topology)T: ClaudinF: F_UNCLASSIFIEDECOD (1.6)
D [auth I]F_UNCLASSIFIEDe8ayoI1 A: alpha bundlesX: Bromodomain-likeH: Claudin (From Topology)T: ClaudinF: F_UNCLASSIFIEDECOD (1.6)
CF_UNCLASSIFIEDe8ayoC2 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: F_UNCLASSIFIEDECOD (1.6)
CF_UNCLASSIFIEDe8ayoC1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: F_UNCLASSIFIEDECOD (1.6)
AF_UNCLASSIFIEDe8ayoA1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: F_UNCLASSIFIEDECOD (1.6)
AF_UNCLASSIFIEDe8ayoA2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: F_UNCLASSIFIEDECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
E [auth J]1.20.140.150 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A domain 3CATH (utative)
D [auth I]1.20.140.150 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A domain 3CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth D],
F [auth B]		PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
B [auth D],
F [auth B]		PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain
A, C
PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
A, C
PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth D],
F [auth B]		Isoform Flip of Glutamate receptor 2
D [auth I],
E [auth J]		Voltage-dependent calcium channel gamma-8 subunit
A, C
Isoform Flip of Glutamate receptor 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth D],
F [auth B]		IPR028082Periplasmic binding protein-like IHomologous Superfamily
B [auth D],
F [auth B]		IPR001508Ionotropic glutamate receptor, metazoaFamily
B [auth D],
F [auth B]		IPR001828Receptor, ligand binding regionDomain
B [auth D],
F [auth B]		IPR001320Ionotropic glutamate receptor, C-terminalDomain
B [auth D],
F [auth B]		IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
B [auth D],
F [auth B]		IPR015683Ionotropic glutamate receptorFamily
D [auth I],
E [auth J]		IPR008372Voltage-dependent calcium channel, gamma-8 subunitFamily
D [auth I],
E [auth J]		IPR051072Voltage-dependent calcium channel gamma subunitFamily
D [auth I],
E [auth J]		IPR004031PMP-22/EMP/MP20/ClaudinFamily
D [auth I],
E [auth J]		IPR008368Voltage-dependent calcium channel, gamma subunitFamily
A, C
IPR028082Periplasmic binding protein-like IHomologous Superfamily
A, C
IPR001828Receptor, ligand binding regionDomain
A, C
IPR001320Ionotropic glutamate receptor, C-terminalDomain
A, C
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
A, C
IPR001508Ionotropic glutamate receptor, metazoaFamily
A, C
IPR015683Ionotropic glutamate receptorFamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
OPMTransmembraneAlpha-helical polytopicIon channel (VIC) superfamilyGlutamate-gated Ion Channel (GIC) family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM