| BindingDB |
http://www.bindingdb.org |
Binding affinities |
| Binding MOAD |
http://bindingmoad.org |
Binding affinities |
| BiGG |
http://bigg.ucsd.edu |
Reconstruction of metabolic pathways |
| BMRB |
http://www.bmrb.wisc.edu |
BMRB-to-PDB mappings |
| Catalytic Site Atlas |
http://www.ebi.ac.uk/thornton-srv/databases/CSA
|
Active sites and catalytic residues in enzymes |
| CATH |
http://www.cathdb.info |
Protein structure classification |
| DrugBank |
http://www.drugbank.ca |
Drug and drug target data |
| PDBflex |
http://pdbflex.org/ |
Protein structure flexibility |
| ExPASy |
http://expasy.org |
Enzyme classification |
| Gencode |
http://www.gencodegenes.org |
Gene structure data |
| Gene Ontology |
http://www.geneontology.org |
Biological ontologies |
| HMMER3 |
http://hmmer.janelia.org |
Sequence similarity searches |
| Human Gene Nomenclature Committee |
http://www.genenames.org |
Human gene name nomenclature and genomic information |
| Immune Epitope Database |
http://www.iedb.org |
Antibody and T cell epitopes |
| LS-SNP |
http://ls-snp.icm.jhu.edu/ls-snp-pdb |
Single Nucleotide Polymorphisms |
| NDB |
http://ndbserver.rutgers.edu/
|
Experimentally-determined nucleic acids and complex assemblies |
| EMDB |
http://emdb-empiar.org/ |
3DEM density maps and associated metadata |
| mpstruc |
http://blanco.biomol.uci.edu/mpstruc/ |
Classification of transmembrane protein structures in PDB |
| NCBI Gene |
http://www.ncbi.nlm.nih.gov/gene |
Gene info, reference sequences, et al. |
| NCBI Taxonomy |
http://www.ncbi.nlm.nih.gov/taxonomy |
Organism Classification |
| OLDERADO |
http://www.ebi.ac.uk/pdbe-apps/nmr/olderado
|
NMR domain composition and clustering |
| OPM |
http://opm.phar.umich.edu |
Orientation of transmembrane proteins |
| PDBbind-CN |
http://www.pdbbind-cn.org |
Binding affinities |
| Pfam |
http://pfam.sanger.ac.uk |
Protein families |
| PhospoSitePlus |
http://www.phosphosite.org |
Mammalian post-translational modifications |
| ProteinDiffraction.org |
http://proteindiffraction.org |
Diffraction images |
| Protein Model Portal |
http://www.proteinmodelportal.org |
Homology models |
| PubMed |
http://www.ncbi.nlm.nih.gov/pubmed |
Citation information |
| PubMedCentral |
http://www.ncbi.nlm.nih.gov/pmc |
Open access literature |
| Recon3D |
https://github.com/SBRG |
A 3-Dimensional View of Human Metabolism and Disease |
| RECOORD |
http://www.ebi.ac.uk/pdbe-apps/nmr/recoord/main.html
|
NMR structure ensembles |
| RESID |
http://pir.georgetown.edu/resid/ |
Protein modifications |
| SBGrid |
http://sbgrid.org |
Structural Biology Data Grid / diffraction images |
| SCOP |
http://scop.mrc-lmb.cam.ac.uk/scop/index.html
|
Structural Classification of Proteins |
| SCOPe |
https://scop.berkeley.edu/
|
Structural Classification of Proteins — extended |
| SIFTS |
http://www.ebi.ac.uk/pdbe/docs/sifts |
Structure, function, taxonomy, sequence |
| Store.Synchrotron Data Store |
https://store.synchrotron.org.au |
Diffraction images |
| Transporter Classification Database |
http://www.tcdb.org |
Classification of membrane transport proteins |
| UniProt |
http://www.uniprot.org |
Protein sequences and annotations |
| UCSC genome browser |
https://genome.ucsc.edu |
Human genome data |
| Pharos - Illuminating the Druggable Genome (NIH Common Fund Data Resource) |
https://pharos.nih.gov |
Drug targets and diseases |
| Genotype-Tissue Expression - GTEx (NIH Common Fund Data Resource) |
https://gtexportal.org |
Tissue-specific gene expression data |
| International Mouse Phenotyping Consortium - IMPC (NIH Common Fund Data Resource) |
https://www.mousephenotype.org |
Mouse gene phenotype data |
