BindingDB |
http://www.bindingdb.org |
Binding affinities |
Binding MOAD |
http://bindingmoad.org |
Binding affinities |
BiGG |
http://bigg.ucsd.edu |
Reconstruction of metabolic pathways |
BMRB |
http://www.bmrb.wisc.edu |
BMRB-to-PDB mappings |
Catalytic Site Atlas |
http://www.ebi.ac.uk/thornton-srv/databases/CSA
|
Active sites and catalytic residues in enzymes |
CATH |
http://www.cathdb.info |
Protein structure classification |
DrugBank |
http://www.drugbank.ca |
Drug and drug target data |
PDBflex |
http://pdbflex.org/ |
Protein structure flexibility |
ExPASy |
http://expasy.org |
Enzyme classification |
Gencode |
http://www.gencodegenes.org |
Gene structure data |
Gene Ontology |
http://www.geneontology.org |
Biological ontologies |
HMMER3 |
http://hmmer.janelia.org |
Sequence similarity searches |
Human Gene Nomenclature Committee |
http://www.genenames.org |
Human gene name nomenclature and genomic information |
Immune Epitope Database |
http://www.iedb.org |
Antibody and T cell epitopes |
LS-SNP |
http://ls-snp.icm.jhu.edu/ls-snp-pdb |
Single Nucleotide Polymorphisms |
NDB |
http://ndbserver.rutgers.edu/
|
Experimentally-determined nucleic acids and complex assemblies |
EMDB |
http://pdbe.org/emdb/ |
3DEM density maps and associated metadata |
mpstruc |
http://blanco.biomol.uci.edu/mpstruc/ |
Classification of transmembrane protein structures in PDB |
NCBI Gene |
http://www.ncbi.nlm.nih.gov/gene |
Gene info, reference sequences, et al. |
NCBI Taxonomy |
http://www.ncbi.nlm.nih.gov/taxonomy |
Organism Classification |
OLDERADO |
http://www.ebi.ac.uk/pdbe-apps/nmr/olderado
|
NMR domain composition and clustering |
OPM |
http://opm.phar.umich.edu |
Orientation of transmembrane proteins |
PDBbind-CN |
http://www.pdbbind-cn.org |
Binding affinities |
Pfam |
http://pfam.sanger.ac.uk |
Protein families |
PhospoSitePlus |
http://www.phosphosite.org |
Mammalian post-translational modifications |
ProteinDiffraction.org |
http://proteindiffraction.org |
Diffraction images |
Protein Model Portal |
http://www.proteinmodelportal.org |
Homology models |
PubMed |
http://www.ncbi.nlm.nih.gov/pubmed |
Citation information |
PubMedCentral |
http://www.ncbi.nlm.nih.gov/pmc |
Open access literature |
Recon3D |
https://github.com/SBRG |
A 3-Dimensional View of Human Metabolism and Disease |
RECOORD |
http://www.ebi.ac.uk/pdbe-apps/nmr/recoord/main.html
|
NMR structure ensembles |
RESID |
http://pir.georgetown.edu/resid/ |
Protein modifications |
SBGrid |
http://sbgrid.org |
Structural Biology Data Grid / diffraction images |
SCOP |
http://scop.mrc-lmb.cam.ac.uk/scop/index.html
|
Protein structure classification |
SIFTS |
http://www.ebi.ac.uk/pdbe/docs/sifts |
Structure, function, taxonomy, sequence |
Store.Synchrotron Data Store |
https://store.synchrotron.org.au |
Diffraction images |
Transporter Classification Database |
http://www.tcdb.org |
Classification of membrane transport proteins |
UniProt |
http://www.uniprot.org |
Protein sequences and annotations |
UCSC genome browser |
https://genome.ucsc.edu |
Human genome data |