Map Genomic Position to Protein Sequence and 3D Structure

 

This analysis tool highlights the location of a gene position of the human genome on protein sequence and 3D structure.  

Note: For looking up gene names, please use the top-bar search (example: BRCA1).
 

Chromosome chr3 : 46,480,971


LTF - 3p21.31

lactotransferrin

Locus: 3p21.31Orientation: -
View position on Gene View: LTF
Position in mRNA: 1592 (phase: 1)
UniProt mapping via isoform 2 (position on isoform:531)
View position 575 on canonical UniProt sequence: P02788 Residue: G
Mapping to 3D protein structure
3D PDB ID Chain ID PDB position UniProt Isoform Image
 Show in 3D 1LCF A 556 2
Mapping to Pathway Maps for P02788
Maps:       
Reactions:
      ESCHER  BiGG
Please cite:

Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank
A Prlić, T Kalro, R Bhattacharya, C Christie, SK Burley, PW Rose
Bioinformatics, btw547