3PUX
Crystal Structure of an outward-facing MBP-Maltose transporter complex bound to ADP-BeF3
- PDB DOI: https://doi.org/10.2210/pdb3PUX/pdb
- Classification: HYDROLASE/TRANSPORT PROTEIN
- Organism(s): Escherichia coli K-12
- Expression System: Escherichia coli
- Mutation(s): No 
- Membrane Protein: Yes  PDBTMMemProtMDmpstruc
- Deposited: 2010-12-06 Released: 2011-08-10 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.265 
- R-Value Work: 0.228 
- R-Value Observed: 0.230 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Maltose-binding periplasmic protein | A [auth E] | 378 | Escherichia coli K-12 | Mutation(s): 0  Gene Names: b4034, ECDH10B_4223, JW3994, malE Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for P0AEX9 (Escherichia coli (strain K12)) Explore P0AEX9  Go to UniProtKB:  P0AEX9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0AEX9 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Maltose transport system permease protein malF | B [auth F] | 514 | Escherichia coli K-12 | Mutation(s): 0  Gene Names: b4033, ECDH10B_4222, JW3993, malF Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for P02916 (Escherichia coli (strain K12)) Explore P02916  Go to UniProtKB:  P02916 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P02916 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Maltose transport system permease protein malG | C [auth G] | 296 | Escherichia coli K-12 | Mutation(s): 0  Gene Names: b4032, ECDH10B_4221, JW3992, malG Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for P68183 (Escherichia coli (strain K12)) Explore P68183  Go to UniProtKB:  P68183 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P68183 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 4 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Maltose/maltodextrin import ATP-binding protein MalK | D [auth A], E [auth B] | 381 | Escherichia coli K-12 | Mutation(s): 0  Gene Names: b4035, ECDH10B_4224, JW3995, malK EC: 3.6.3.19 Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for P68187 (Escherichia coli (strain K12)) Explore P68187  Go to UniProtKB:  P68187 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P68187 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 5 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PGV Query on PGV | H [auth F] I [auth F] J [auth F] K [auth F] L [auth G] | (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE C40 H77 O10 P ADYWCMPUNIVOEA-GPJPVTGXSA-N | |||
UMQ Query on UMQ | G [auth E] | UNDECYL-MALTOSIDE C23 H44 O11 UYEMNFYVTFDKRG-ZNGNCRBCSA-N | |||
ADP Query on ADP | S [auth A], V [auth B] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N | |||
BEF Query on BEF | T [auth A], W [auth B] | BERYLLIUM TRIFLUORIDE ION Be F3 OGIAHMCCNXDTIE-UHFFFAOYSA-K | |||
MG Query on MG | R [auth A], U [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 5 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900001 Query on PRD_900001 | F [auth C] | alpha-maltose | Oligosaccharide / Nutrient |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.265 
- R-Value Work: 0.228 
- R-Value Observed: 0.230 
- Space Group: P 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 82.13 | α = 85.58 |
b = 97.34 | β = 78.98 |
c = 112.84 | γ = 72.25 |
Software Name | Purpose |
---|---|
HKL-2000 | data collection |
PHASER | phasing |
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
Entry History 
Deposition Data
- Released Date: 2011-08-10  Deposition Author(s): Oldham, M.L., Chen, J.
Revision History (Full details and data files)
- Version 1.0: 2011-08-10
Type: Initial release - Version 1.1: 2011-09-28
Changes: Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Non-polymer description, Structure summary - Version 2.1: 2023-09-06
Changes: Data collection, Database references, Refinement description, Structure summary