3U0W

AD related murine antibody Fragment

• PDB DOI: https://doi.org/10.2210/pdb3U0W/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Mus musculus, Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2011-09-29 Released: 2012-10-03 
• Deposition Author(s): Miles, L.A., Crespi, G.A.N., Parker, M.W.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.235 
• R-Value Work: 0.189 
• R-Value Observed: 0.191 

Literature

Structure of an AD related antibody

Miles, L.A., Crespi, G.A.N., Nero, T.L., Ascher, D.B., Gao, C., Parker, M.W.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 Pseudo Symmetry: Cyclic - C2  (Explore in 3D)
Pseudo Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 46.61 kDa 
• Atom Count: 3,508 
• Modelled Residue Count: 419 
• Deposited Residue Count: 430 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fab Heavy Chain, Ig gamma-1 chain C region	A [auth H]	216	Mus musculus, Homo sapiens This entity is chimeric	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P01808 (Mus musculus) Explore P01808  Go to UniProtKB:  P01808
Find proteins for P01857 (Homo sapiens) Explore P01857  Go to UniProtKB:  P01857
PHAROS:  P01857 GTEx:  ENSG00000211896
UniProt Groups	P01857P01808

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Fab Light Chain, Ig kappa chain C region	B [auth L]	214	Mus musculus, Homo sapiens This entity is chimeric	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P01647 (Mus musculus) Explore P01647  Go to UniProtKB:  P01647
Find proteins for P01834 (Homo sapiens) Explore P01834  Go to UniProtKB:  P01834
PHAROS:  P01834
UniProt Groups	P01834P01647

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.235 
• R-Value Work: 0.189 
• R-Value Observed: 0.191 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 64.047	α = 90
b = 81.292	β = 90
c = 108.474	γ = 90

Software Package:

Software Name	Purpose
Blu-Ice	data collection
PHASER	phasing
REFMAC	refinement
HKL-2000	data reduction
SCALEPACK	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-10-03 
Deposition Author(s): Miles, L.A., Crespi, G.A.N., Parker, M.W.

Revision History  

• Version 1.0: 2012-10-03
  Type: Initial release
  
• Version 1.1: 2017-08-16
  Changes: Refinement description, Source and taxonomy
• Version 1.2: 2017-11-08
  Changes: Refinement description
• Version 1.3: 2023-11-01
  Changes: Data collection, Database references, Refinement description