4V9P

Control of ribosomal subunit rotation by elongation factor G


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.215 

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This is version 1.2 of the entry. See complete history


Literature

Control of ribosomal subunit rotation by elongation factor G.

Pulk, A.Cate, J.H.

(2013) Science 340: 1235970-1235970

  • DOI: https://doi.org/10.1126/science.1235970
  • Primary Citation of Related Structures:  
    4V9O, 4V9P

  • PubMed Abstract: 

    Protein synthesis by the ribosome requires the translocation of transfer RNAs and messenger RNA by one codon after each peptide bond is formed, a reaction that requires ribosomal subunit rotation and is catalyzed by the guanosine triphosphatase (GTPase) elongation factor G (EF-G). We determined 3 angstrom resolution x-ray crystal structures of EF-G complexed with a nonhydrolyzable guanosine 5'-triphosphate (GTP) analog and bound to the Escherichia coli ribosome in different states of ribosomal subunit rotation. The structures reveal that EF-G binding to the ribosome stabilizes switch regions in the GTPase active site, resulting in a compact EF-G conformation that favors an intermediate state of ribosomal subunit rotation. These structures suggest that EF-G controls the translocation reaction by cycles of conformational rigidity and relaxation before and after GTP hydrolysis.


  • Organizational Affiliation

    Department of Molecular and Cell Biology, California Institute for Quantitative Biosciences, University of California, Berkeley, CA 94720, USA.


Macromolecules

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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L2C [auth AC],
FB [auth CC],
HD [auth EC],
KF [auth GC]
273Escherichia coli K-12Mutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L3D [auth AD],
GB [auth CD],
ID [auth ED],
LF [auth GD]
209Escherichia coli K-12Mutation(s): 0 
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Find proteins for P60438 (Escherichia coli (strain K12))
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L4E [auth AE],
HB [auth CE],
JD [auth EE],
MF [auth GE]
201Escherichia coli K-12Mutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L5F [auth AF],
IB [auth CF],
KD [auth EF],
NF [auth GF]
179Escherichia coli K-12Mutation(s): 0 
UniProt
Find proteins for P62399 (Escherichia coli (strain K12))
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L6G [auth AG],
JB [auth CG],
LD [auth EG],
OF [auth GG]
177Escherichia coli K-12Mutation(s): 0 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L9H [auth AH],
KB [auth CH],
MD [auth EH],
PF [auth GH]
50Escherichia coli K-12Mutation(s): 0 
Gene Names: rpll
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L11I [auth AI],
LB [auth CI],
ND [auth EI],
QF [auth GI]
142Escherichia coli K-12Mutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L13J [auth AJ],
MB [auth CJ],
OD [auth EJ],
RF [auth GJ]
142Escherichia coli K-12Mutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L14K [auth AK],
NB [auth CK],
PD [auth EK],
SF [auth GK]
123Escherichia coli K-12Mutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L15L [auth AL],
OB [auth CL],
QD [auth EL],
TF [auth GL]
144Escherichia coli K-12Mutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L16M [auth AM],
PB [auth CM],
RD [auth EM],
UF [auth GM]
136Escherichia coli K-12Mutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L17N [auth AN],
QB [auth CN],
SD [auth EN],
VF [auth GN]
127Escherichia coli K-12Mutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L18O [auth AO],
RB [auth CO],
TD [auth EO],
WF [auth GO]
117Escherichia coli K-12Mutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L19P [auth AP],
SB [auth CP],
UD [auth EP],
XF [auth GP]
115Escherichia coli K-12Mutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L20Q [auth AQ],
TB [auth CQ],
VD [auth EQ],
YF [auth GQ]
118Escherichia coli K-12Mutation(s): 0 
UniProt
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L21R [auth AR],
UB [auth CR],
WD [auth ER],
ZF [auth GR]
103Escherichia coli K-12Mutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L22AG [auth GS],
S [auth AS],
VB [auth CS],
XD [auth ES]
110Escherichia coli K-12Mutation(s): 0 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L23BG [auth GT],
T [auth AT],
WB [auth CT],
YD [auth ET]
100Escherichia coli K-12Mutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L24CG [auth GU],
U [auth AU],
XB [auth CU],
ZD [auth EU]
104Escherichia coli K-12Mutation(s): 0 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L25AE [auth EV],
DG [auth GV],
V [auth AV],
YB [auth CV]
94Escherichia coli K-12Mutation(s): 0 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L27BE [auth EW],
EG [auth GW],
W [auth AW],
ZB [auth CW]
85Escherichia coli K-12Mutation(s): 0 
UniProt
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L28AC [auth CX],
CE [auth EX],
FG [auth GX],
X [auth AX]
78Escherichia coli K-12Mutation(s): 0 
UniProt
Find proteins for P0A7M2 (Escherichia coli (strain K12))
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L29BC [auth CY],
DE [auth EY],
GG [auth GY],
Y [auth AY]
63Escherichia coli K-12Mutation(s): 0 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L30CC [auth CZ],
EE [auth EZ],
HG [auth GZ],
Z [auth AZ]
59Escherichia coli K-12Mutation(s): 0 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L32AA [auth A0],
DC [auth C0],
FE [auth E0],
IG [auth G0]
57Escherichia coli K-12Mutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L33BA [auth A1],
EC [auth C1],
GE [auth E1],
JG [auth G1]
55Escherichia coli K-12Mutation(s): 0 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L34CA [auth A2],
FC [auth C2],
HE [auth E2],
KG [auth G2]
46Escherichia coli K-12Mutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L35DA [auth A3],
GC [auth C3],
IE [auth E3],
LG [auth G3]
65Escherichia coli K-12Mutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L36EA [auth A4],
HC [auth C4],
JE [auth E4],
MG [auth G4]
38Escherichia coli K-12Mutation(s): 0 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L10FA [auth A5],
KE [auth E5]
165Escherichia coli K-12Mutation(s): 0 
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S2HA [auth BB],
JC [auth DB],
ME [auth FB],
OG [auth HB]
241Escherichia coli K-12Mutation(s): 0 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S3IA [auth BC],
KC [auth DC],
NE [auth FC],
PG [auth HC]
233Escherichia coli K-12Mutation(s): 0 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S4JA [auth BD],
LC [auth DD],
OE [auth FD],
QG [auth HD]
206Escherichia coli K-12Mutation(s): 0 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S5KA [auth BE],
MC [auth DE],
PE [auth FE],
RG [auth HE]
167Escherichia coli K-12Mutation(s): 0 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S6LA [auth BF],
NC [auth DF],
QE [auth FF],
SG [auth HF]
135Escherichia coli K-12Mutation(s): 0 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S7MA [auth BG],
OC [auth DG],
RE [auth FG],
TG [auth HG]
179Escherichia coli K-12Mutation(s): 0 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S8NA [auth BH],
PC [auth DH],
SE [auth FH],
UG [auth HH]
130Escherichia coli K-12Mutation(s): 0 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S9OA [auth BI],
QC [auth DI],
TE [auth FI],
VG [auth HI]
130Escherichia coli K-12Mutation(s): 0 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S10PA [auth BJ],
RC [auth DJ],
UE [auth FJ],
WG [auth HJ]
103Escherichia coli K-12Mutation(s): 0 
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S11QA [auth BK],
SC [auth DK],
VE [auth FK],
XG [auth HK]
129Escherichia coli K-12Mutation(s): 0 
UniProt
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S12RA [auth BL],
TC [auth DL],
WE [auth FL],
YG [auth HL]
124Escherichia coli K-12Mutation(s): 0 
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S13SA [auth BM],
UC [auth DM],
XE [auth FM],
ZG [auth HM]
118Escherichia coli K-12Mutation(s): 0 
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S14AH [auth HN],
TA [auth BN],
VC [auth DN],
YE [auth FN]
101Escherichia coli K-12Mutation(s): 0 
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S15BH [auth HO],
UA [auth BO],
WC [auth DO],
ZE [auth FO]
89Escherichia coli K-12Mutation(s): 0 
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S16AF [auth FP],
CH [auth HP],
VA [auth BP],
XC [auth DP]
82Escherichia coli K-12Mutation(s): 0 
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S17BF [auth FQ],
DH [auth HQ],
WA [auth BQ],
YC [auth DQ]
84Escherichia coli K-12Mutation(s): 0 
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S18CF [auth FR],
EH [auth HR],
XA [auth BR],
ZC [auth DR]
75Escherichia coli K-12Mutation(s): 0 
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S19AD [auth DS],
DF [auth FS],
FH [auth HS],
YA [auth BS]
92Escherichia coli K-12Mutation(s): 0 
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S20BD [auth DT],
EF [auth FT],
GH [auth HT],
ZA [auth BT]
87Escherichia coli K-12Mutation(s): 0 
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S21AB [auth BU],
CD [auth DU],
FF [auth FU],
HH [auth HU]
71Escherichia coli K-12Mutation(s): 0 
UniProt
Find proteins for P68679 (Escherichia coli (strain K12))
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
elongation factor GBB [auth BV],
DD [auth DV],
GF [auth FV],
IH [auth HV]
704Escherichia coli K-12Mutation(s): 0 
Gene Names: fusA
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
ViomycinCB [auth BW],
ED [auth DW],
HF [auth FW]
6StreptomycesMutation(s): 0 
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Entity ID: 1
MoleculeChains LengthOrganismImage
23S rRNAA [auth AA],
DB [auth CA],
FD [auth EA],
IF [auth GA]
2,904Escherichia coli K-12
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Entity ID: 2
MoleculeChains LengthOrganismImage
5S rRNAB [auth AB],
EB [auth CB],
GD [auth EB],
JF [auth GB]
120Escherichia coli K-12
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Entity ID: 33
MoleculeChains LengthOrganismImage
16S rRNAGA [auth BA],
IC [auth DA],
LE [auth FA],
NG [auth HA]
1,542Escherichia coli K-12
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Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GCP
Query on GCP

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BKA [auth HV],
MO [auth BV],
RV [auth DV],
WCA [auth FV]
PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
C11 H18 N5 O13 P3
PHBDHXOBFUBCJD-KQYNXXCUSA-N
ZN
Query on ZN

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EBA [auth E4],
JIA [auth G4],
UM [auth A4],
ZT [auth C4]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
Query on MG

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AAA [auth EA]
ABA [auth EC]
ACA [auth FA]
ADA [auth GA]
AEA [auth GA]
AAA [auth EA],
ABA [auth EC],
ACA [auth FA],
ADA [auth GA],
AEA [auth GA],
AFA [auth GA],
AGA [auth GA],
AHA [auth GA],
AI [auth AA],
AIA [auth GA],
AJ [auth AA],
AJA [auth HA],
AK [auth AA],
AKA [auth HT],
AL [auth AA],
AM [auth AA],
AN [auth BA],
AO [auth BA],
AP [auth CA],
AQ [auth CA],
AR [auth CA],
AS [auth CA],
AT [auth CA],
AU [auth DA],
AV [auth DA],
AW [auth EA],
AX [auth EA],
AY [auth EA],
AZ [auth EA],
BAA [auth EA],
BBA [auth ED],
BCA [auth FA],
BDA [auth GA],
BEA [auth GA],
BFA [auth GA],
BGA [auth GA],
BHA [auth GA],
BI [auth AA],
BIA [auth GA],
BJ [auth AA],
BJA [auth HA],
BK [auth AA],
BL [auth AA],
BM [auth AA],
BN [auth BA],
BO [auth BA],
BP [auth CA],
BQ [auth CA],
BR [auth CA],
BS [auth CA],
BT [auth CA],
BU [auth DA],
BV [auth DA],
BW [auth EA],
BX [auth EA],
BY [auth EA],
BZ [auth EA],
CAA [auth EA],
CBA [auth ED],
CCA [auth FA],
CDA [auth GA],
CEA [auth GA],
CFA [auth GA],
CGA [auth GA],
CHA [auth GA],
CI [auth AA],
CIA [auth GB],
CJ [auth AA],
CJA [auth HA],
CK [auth AA],
CKA [auth HV],
CL [auth AA],
CM [auth AA],
CN [auth BA],
CO [auth BA],
CP [auth CA],
CQ [auth CA],
CR [auth CA],
CS [auth CA],
CT [auth CA],
CU [auth DA],
CV [auth DA],
CW [auth EA],
CX [auth EA],
CY [auth EA],
CZ [auth EA],
DAA [auth EA],
DBA [auth EQ],
DCA [auth FA],
DDA [auth GA],
DEA [auth GA],
DFA [auth GA],
DGA [auth GA],
DHA [auth GA],
DI [auth AA],
DIA [auth GB],
DJ [auth AA],
DJA [auth HA],
DK [auth AA],
DL [auth AA],
DM [auth AA],
DN [auth BA],
DO [auth BA],
DP [auth CA],
DQ [auth CA],
DR [auth CA],
DS [auth CA],
DT [auth CA],
DU [auth DA],
DV [auth DA],
DW [auth EA],
DX [auth EA],
DY [auth EA],
DZ [auth EA],
EAA [auth EA],
ECA [auth FA],
EDA [auth GA],
EEA [auth GA],
EFA [auth GA],
EGA [auth GA],
EHA [auth GA],
EI [auth AA],
EIA [auth GB],
EJ [auth AA],
EJA [auth HA],
EK [auth AA],
EL [auth AA],
EM [auth AA],
EN [auth BA],
EO [auth BA],
EP [auth CA],
EQ [auth CA],
ER [auth CA],
ES [auth CA],
ET [auth CA],
EU [auth DA],
EV [auth DA],
EW [auth EA],
EX [auth EA],
EY [auth EA],
EZ [auth EA],
FAA [auth EA],
FBA [auth FA],
FCA [auth FA],
FDA [auth GA],
FEA [auth GA],
FFA [auth GA],
FGA [auth GA],
FHA [auth GA],
FI [auth AA],
FIA [auth GB],
FJ [auth AA],
FJA [auth HA],
FK [auth AA],
FL [auth AA],
FM [auth AA],
FN [auth BA],
FO [auth BA],
FP [auth CA],
FQ [auth CA],
FR [auth CA],
FS [auth CA],
FT [auth CA],
FU [auth DA],
FV [auth DA],
FW [auth EA],
FX [auth EA],
FY [auth EA],
FZ [auth EA],
GAA [auth EA],
GBA [auth FA],
GCA [auth FA],
GDA [auth GA],
GEA [auth GA],
GFA [auth GA],
GGA [auth GA],
GHA [auth GA],
GI [auth AA],
GIA [auth GC],
GJ [auth AA],
GJA [auth HA],
GK [auth AA],
GL [auth AA],
GM [auth AA],
GN [auth BA],
GO [auth BA],
GP [auth CA],
GQ [auth CA],
GR [auth CA],
GS [auth CA],
GT [auth CA],
GU [auth DA],
GV [auth DA],
GW [auth EA],
GX [auth EA],
GY [auth EA],
GZ [auth EA],
HAA [auth EA],
HBA [auth FA],
HCA [auth FA],
HDA [auth GA],
HEA [auth GA],
HFA [auth GA],
HGA [auth GA],
HHA [auth GA],
HI [auth AA],
HIA [auth GL],
HJ [auth AA],
HJA [auth HA],
HK [auth AA],
HL [auth AA],
HM [auth AA],
HN [auth BA],
HO [auth BA],
HP [auth CA],
HQ [auth CA],
HR [auth CA],
HS [auth CA],
HT [auth CA],
HU [auth DA],
HV [auth DA],
HW [auth EA],
HX [auth EA],
HY [auth EA],
HZ [auth EA],
IAA [auth EA],
IBA [auth FA],
ICA [auth FA],
IDA [auth GA],
IEA [auth GA],
IFA [auth GA],
IGA [auth GA],
IHA [auth GA],
II [auth AA],
IIA [auth GS],
IJ [auth AA],
IJA [auth HA],
IK [auth AA],
IL [auth AA],
IM [auth AA],
IN [auth BA],
IO [auth BA],
IP [auth CA],
IQ [auth CA],
IR [auth CA],
IS [auth CA],
IT [auth CA],
IU [auth DA],
IV [auth DA],
IW [auth EA],
IX [auth EA],
IY [auth EA],
IZ [auth EA],
JAA [auth EA],
JBA [auth FA],
JCA [auth FA],
JDA [auth GA],
JEA [auth GA],
JFA [auth GA],
JGA [auth GA],
JH [auth AA],
JHA [auth GA],
JI [auth AA],
JJ [auth AA],
JJA [auth HA],
JK [auth AA],
JL [auth AA],
JM [auth AB],
JN [auth BA],
JO [auth BE],
JP [auth CA],
JQ [auth CA],
JR [auth CA],
JS [auth CA],
JT [auth CA],
JU [auth DA],
JV [auth DA],
JW [auth EA],
JX [auth EA],
JY [auth EA],
JZ [auth EA],
KAA [auth EA],
KBA [auth FA],
KCA [auth FA],
KDA [auth GA],
KEA [auth GA],
KFA [auth GA],
KGA [auth GA],
KH [auth AA],
KHA [auth GA],
KI [auth AA],
KIA [auth HA],
KJ [auth AA],
KJA [auth HA],
KK [auth AA],
KL [auth AA],
KM [auth AB],
KN [auth BA],
KO [auth BL],
KP [auth CA],
KQ [auth CA],
KR [auth CA],
KS [auth CA],
KT [auth CA],
KU [auth DA],
KV [auth DA],
KW [auth EA],
KX [auth EA],
KY [auth EA],
KZ [auth EA],
LAA [auth EA],
LBA [auth FA],
LCA [auth FA],
LDA [auth GA],
LEA [auth GA],
LFA [auth GA],
LGA [auth GA],
LH [auth AA],
LHA [auth GA],
LI [auth AA],
LIA [auth HA],
LJ [auth AA],
LJA [auth HA],
LK [auth AA],
LL [auth AA],
LM [auth AB],
LN [auth BA],
LO [auth BU],
LP [auth CA],
LQ [auth CA],
LR [auth CA],
LS [auth CA],
LT [auth CA],
LU [auth DA],
LV [auth DA],
LW [auth EA],
LX [auth EA],
LY [auth EA],
LZ [auth EA],
MAA [auth EA],
MBA [auth FA],
MCA [auth FA],
MDA [auth GA],
MEA [auth GA],
MFA [auth GA],
MGA [auth GA],
MH [auth AA],
MHA [auth GA],
MI [auth AA],
MIA [auth HA],
MJ [auth AA],
MJA [auth HA],
MK [auth AA],
ML [auth AA],
MM [auth AB],
MN [auth BA],
MP [auth CA],
MQ [auth CA],
MR [auth CA],
MS [auth CA],
MT [auth CA],
MU [auth DA],
MV [auth DA],
MW [auth EA],
MX [auth EA],
MY [auth EA],
MZ [auth EA],
NAA [auth EA],
NBA [auth FA],
NCA [auth FA],
NDA [auth GA],
NEA [auth GA],
NFA [auth GA],
NGA [auth GA],
NH [auth AA],
NHA [auth GA],
NI [auth AA],
NIA [auth HA],
NJ [auth AA],
NJA [auth HA],
NK [auth AA],
NL [auth AA],
NM [auth AC],
NN [auth BA],
NO [auth BV],
NP [auth CA],
NQ [auth CA],
NR [auth CA],
NS [auth CA],
NT [auth CA],
NU [auth DA],
NV [auth DA],
NW [auth EA],
NX [auth EA],
NY [auth EA],
NZ [auth EA],
OAA [auth EA],
OBA [auth FA],
OCA [auth FA],
ODA [auth GA],
OEA [auth GA],
OFA [auth GA],
OGA [auth GA],
OH [auth AA],
OHA [auth GA],
OI [auth AA],
OIA [auth HA],
OJ [auth AA],
OJA [auth HA],
OK [auth AA],
OL [auth AA],
OM [auth AC],
ON [auth BA],
OO [auth CA],
OP [auth CA],
OQ [auth CA],
OR [auth CA],
OS [auth CA],
OT [auth CA],
OU [auth DA],
OV [auth DA],
OW [auth EA],
OX [auth EA],
OY [auth EA],
OZ [auth EA],
PAA [auth EA],
PBA [auth FA],
PCA [auth FA],
PDA [auth GA],
PEA [auth GA],
PFA [auth GA],
PGA [auth GA],
PH [auth AA],
PHA [auth GA],
PI [auth AA],
PIA [auth HA],
PJ [auth AA],
PJA [auth HA],
PK [auth AA],
PL [auth AA],
PM [auth AC],
PN [auth BA],
PO [auth CA],
PP [auth CA],
PQ [auth CA],
PR [auth CA],
PS [auth CA],
PT [auth CA],
PU [auth DA],
PV [auth DA],
PW [auth EA],
PX [auth EA],
PY [auth EA],
PZ [auth EA],
QAA [auth EA],
QBA [auth FA],
QCA [auth FA],
QDA [auth GA],
QEA [auth GA],
QFA [auth GA],
QGA [auth GA],
QH [auth AA],
QHA [auth GA],
QI [auth AA],
QIA [auth HA],
QJ [auth AA],
QJA [auth HA],
QK [auth AA],
QL [auth AA],
QM [auth AD],
QN [auth BA],
QO [auth CA],
QP [auth CA],
QQ [auth CA],
QR [auth CA],
QS [auth CA],
QT [auth CA],
QU [auth DA],
QV [auth DU],
QW [auth EA],
QX [auth EA],
QY [auth EA],
QZ [auth EA],
RAA [auth EA],
RBA [auth FA],
RCA [auth FA],
RDA [auth GA],
REA [auth GA],
RFA [auth GA],
RGA [auth GA],
RH [auth AA],
RHA [auth GA],
RI [auth AA],
RIA [auth HA],
RJ [auth AA],
RJA [auth HA],
RK [auth AA],
RL [auth AA],
RM [auth AE],
RN [auth BA],
RO [auth CA],
RP [auth CA],
RQ [auth CA],
RR [auth CA],
RS [auth CA],
RT [auth CA],
RU [auth DA],
RW [auth EA],
RX [auth EA],
RY [auth EA],
RZ [auth EA],
SAA [auth EA],
SBA [auth FA],
SCA [auth FA],
SDA [auth GA],
SEA [auth GA],
SFA [auth GA],
SGA [auth GA],
SH [auth AA],
SHA [auth GA],
SI [auth AA],
SIA [auth HA],
SJ [auth AA],
SJA [auth HA],
SK [auth AA],
SL [auth AA],
SM [auth AT],
SN [auth BA],
SO [auth CA],
SP [auth CA],
SQ [auth CA],
SR [auth CA],
SS [auth CA],
ST [auth CB],
SU [auth DA],
SV [auth DV],
SW [auth EA],
SX [auth EA],
SY [auth EA],
SZ [auth EA],
TAA [auth EA],
TBA [auth FA],
TCA [auth FA],
TDA [auth GA],
TEA [auth GA],
TFA [auth GA],
TGA [auth GA],
TH [auth AA],
THA [auth GA],
TI [auth AA],
TIA [auth HA],
TJ [auth AA],
TJA [auth HA],
TK [auth AA],
TL [auth AA],
TM [auth A3],
TN [auth BA],
TO [auth CA],
TP [auth CA],
TQ [auth CA],
TR [auth CA],
TS [auth CA],
TT [auth CB],
TU [auth DA],
TV [auth EA],
TW [auth EA],
TX [auth EA],
TY [auth EA],
TZ [auth EA],
UAA [auth EA],
UBA [auth FA],
UCA [auth FE],
UDA [auth GA],
UEA [auth GA],
UFA [auth GA],
UGA [auth GA],
UH [auth AA],
UHA [auth GA],
UI [auth AA],
UIA [auth HA],
UJ [auth AA],
UJA [auth HA],
UK [auth AA],
UL [auth AA],
UN [auth BA],
UO [auth CA],
UP [auth CA],
UQ [auth CA],
UR [auth CA],
US [auth CA],
UT [auth CB],
UU [auth DA],
UV [auth EA],
UW [auth EA],
UX [auth EA],
UY [auth EA],
UZ [auth EA],
VAA [auth EA],
VBA [auth FA],
VCA [auth FU],
VDA [auth GA],
VEA [auth GA],
VFA [auth GA],
VGA [auth GA],
VH [auth AA],
VHA [auth GA],
VI [auth AA],
VIA [auth HA],
VJ [auth AA],
VJA [auth HA],
VK [auth AA],
VL [auth AA],
VM [auth BA],
VN [auth BA],
VO [auth CA],
VP [auth CA],
VQ [auth CA],
VR [auth CA],
VS [auth CA],
VT [auth CB],
VU [auth DA],
VV [auth EA],
VW [auth EA],
VX [auth EA],
VY [auth EA],
VZ [auth EA],
WAA [auth EB],
WBA [auth FA],
WDA [auth GA],
WEA [auth GA],
WFA [auth GA],
WGA [auth GA],
WH [auth AA],
WHA [auth GA],
WI [auth AA],
WIA [auth HA],
WJ [auth AA],
WJA [auth HA],
WK [auth AA],
WL [auth AA],
WM [auth BA],
WN [auth BA],
WO [auth CA],
WP [auth CA],
WQ [auth CA],
WR [auth CA],
WS [auth CA],
WT [auth CD],
WU [auth DA],
WV [auth EA],
WW [auth EA],
WX [auth EA],
WY [auth EA],
WZ [auth EA],
XAA [auth EB],
XBA [auth FA],
XCA [auth FV],
XDA [auth GA],
XEA [auth GA],
XFA [auth GA],
XGA [auth GA],
XH [auth AA],
XHA [auth GA],
XI [auth AA],
XIA [auth HA],
XJ [auth AA],
XJA [auth HA],
XK [auth AA],
XL [auth AA],
XM [auth BA],
XN [auth BA],
XO [auth CA],
XP [auth CA],
XQ [auth CA],
XR [auth CA],
XS [auth CA],
XT [auth CE],
XU [auth DA],
XV [auth EA],
XW [auth EA],
XX [auth EA],
XY [auth EA],
XZ [auth EA],
YAA [auth EB],
YBA [auth FA],
YCA [auth GA],
YDA [auth GA],
YEA [auth GA],
YFA [auth GA],
YGA [auth GA],
YH [auth AA],
YHA [auth GA],
YI [auth AA],
YIA [auth HA],
YJ [auth AA],
YJA [auth HC],
YK [auth AA],
YL [auth AA],
YM [auth BA],
YN [auth BA],
YO [auth CA],
YP [auth CA],
YQ [auth CA],
YR [auth CA],
YS [auth CA],
YT [auth C4],
YU [auth DA],
YV [auth EA],
YW [auth EA],
YX [auth EA],
YY [auth EA],
YZ [auth EA],
ZAA [auth EB],
ZBA [auth FA],
ZCA [auth GA],
ZDA [auth GA],
ZEA [auth GA],
ZFA [auth GA],
ZGA [auth GA],
ZH [auth AA],
ZHA [auth GA],
ZI [auth AA],
ZIA [auth HA],
ZJ [auth AA],
ZJA [auth HE],
ZK [auth AA],
ZL [auth AA],
ZM [auth BA],
ZN [auth BA],
ZO [auth CA],
ZP [auth CA],
ZQ [auth CA],
ZR [auth CA],
ZS [auth CA],
ZU [auth DA],
ZV [auth EA],
ZW [auth EA],
ZX [auth EA],
ZY [auth EA],
ZZ [auth EA]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Modified Residues  3 Unique
IDChains TypeFormula2D DiagramParent
5OH
Query on 5OH
CB [auth BW],
ED [auth DW],
HF [auth FW]
L-PEPTIDE LINKINGC6 H12 N4 O3ALA
DPP
Query on DPP
CB [auth BW],
ED [auth DW],
HF [auth FW]
L-PEPTIDE LINKINGC3 H8 N2 O2ALA
KBE
Query on KBE
CB [auth BW],
ED [auth DW],
HF [auth FW]
L-PEPTIDE LINKINGC6 H14 N2 O2LYS
Biologically Interesting Molecules (External Reference) 1 Unique
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.215 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 361.14α = 90
b = 360.51β = 103.217
c = 429.73γ = 90
Software Package:
Software NamePurpose
XSCALEdata scaling
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata scaling

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-07-09
    Type: Initial release
  • Version 1.1: 2014-12-10
    Changes: Other
  • Version 1.2: 2014-12-17
    Changes: Source and taxonomy, Structure summary