5DWU

Beta common receptor in complex with a Fab

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.97 Å
  • R-Value Free: 0.330 
  • R-Value Work: 0.288 
  • R-Value Observed: 0.290 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.5 of the entry. See complete history. 



Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cytokine receptor common subunit beta224Homo sapiensMutation(s): 0 
Gene Names: CSF2RB, IL3RB, IL5RB
UniProt & NIH Common Fund Data Resources
Find proteins for P32927 (Homo sapiens)
Explore P32927 
Go to UniProtKB:  P32927
PHAROS:  P32927
GTEx:  ENSG00000100368 
Entity Groups  
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UniProt GroupP32927
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Cytokine receptor common subunit beta203Homo sapiensMutation(s): 1 
Gene Names: CSF2RB, IL3RB, IL5RB
UniProt & NIH Common Fund Data Resources
Find proteins for P32927 (Homo sapiens)
Explore P32927 
Go to UniProtKB:  P32927
PHAROS:  P32927
GTEx:  ENSG00000100368 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP32927
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Fab - Heavy ChainC [auth H]222Homo sapiensMutation(s): 0 
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Sequence Annotations
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Fab - Light ChainD [auth L]214Homo sapiensMutation(s): 0 
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Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG
Download Ideal Coordinates CCD File 
E [auth A],
F [auth A]		2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.97 Å
  • R-Value Free: 0.330 
  • R-Value Work: 0.288 
  • R-Value Observed: 0.290 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 99.953α = 90
b = 71.289β = 102.71
c = 221.234γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
PHASERphasing
PDB_EXTRACTdata extraction
XDSdata reduction

Structure Validation

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Ligand Structure Quality Assessment 


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Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Health and Medical Research Council (NHMRC, Australia)Australia--

Revision History  (Full details and data files)

  • Version 1.0: 2015-12-30
    Type: Initial release
  • Version 1.1: 2016-02-10
    Changes: Database references
  • Version 1.2: 2016-04-06
    Changes: Database references
  • Version 1.3: 2017-09-20
    Changes: Author supporting evidence, Data collection, Derived calculations
  • Version 1.4: 2020-01-08
    Changes: Author supporting evidence, Derived calculations
  • Version 1.5: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Derived calculations, Structure summary