5UMD

Structure of the Plasmodium falciparum 80S ribosome bound to the antimalarial drug mefloquine

  • Classification: RIBOSOME
  • Organism(s): Plasmodium falciparum 3D7
  • Mutation(s): No 

  • Deposited: 2017-01-27 Released: 2017-03-01 
  • Deposition Author(s): Wong, W., Bai, X.-C., Brown, A., Scheres, S., Baum, J.
  • Funding Organization(s): NHMRC, Medical Research Council (United Kingdom), Wellcome Trust, Human Frontier Science Program, Department of Industry, Innovation, Science, Research and Tertiary Education, Australian Government|Australian Research Council

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Mefloquine targets the Plasmodium falciparum 80S ribosome to inhibit protein synthesis.

Wong, W.Bai, X.C.Sleebs, B.E.Triglia, T.Brown, A.Thompson, J.K.Jackson, K.E.Hanssen, E.Marapana, D.S.Fernandez, I.S.Ralph, S.A.Cowman, A.F.Scheres, S.H.Baum, J.

(2017) Nat Microbiol 2: 17031-17031

  • DOI: https://doi.org/10.1038/nmicrobiol.2017.31
  • Primary Citation of Related Structures:  
    5UMD

  • PubMed Abstract: 

    Malaria control is heavily dependent on chemotherapeutic agents for disease prevention and drug treatment. Defining the mechanism of action for licensed drugs, for which no target is characterized, is critical to the development of their second-generation derivatives to improve drug potency towards inhibition of their molecular targets. Mefloquine is a widely used antimalarial without a known mode of action. Here, we demonstrate that mefloquine is a protein synthesis inhibitor. We solved a 3.2 Å cryo-electron microscopy structure of the Plasmodium falciparum 80S ribosome with the (+)-mefloquine enantiomer bound to the ribosome GTPase-associated centre. Mutagenesis of mefloquine-binding residues generates parasites with increased resistance, confirming the parasite-killing mechanism. Furthermore, structure-guided derivatives with an altered piperidine group, predicted to improve binding, show enhanced parasiticidal effect. These data reveal one possible mode of action for mefloquine and demonstrate the vast potential of cryo-electron microscopy to guide the development of mefloquine derivatives to inhibit parasite protein synthesis.


  • Organizational Affiliation

    Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, 3052, Australia.


Macromolecules

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L2260Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8I3T9 (Plasmodium falciparum (isolate 3D7))
Explore Q8I3T9 
Go to UniProtKB:  Q8I3T9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8I3T9
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L3386Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8IJC6 (Plasmodium falciparum (isolate 3D7))
Explore Q8IJC6 
Go to UniProtKB:  Q8IJC6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IJC6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L4411Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8I431 (Plasmodium falciparum (isolate 3D7))
Explore Q8I431 
Go to UniProtKB:  Q8I431
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8I431
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L11a, putative173Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8IBQ6 (Plasmodium falciparum (isolate 3D7))
Explore Q8IBQ6 
Go to UniProtKB:  Q8IBQ6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IBQ6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L6, putative190Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8IE85 (Plasmodium falciparum (isolate 3D7))
Explore Q8IE85 
Go to UniProtKB:  Q8IE85
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IE85
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L6-2, putative221Plasmodium falciparum 3D7Mutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L7-3, putative283Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8ILL2 (Plasmodium falciparum (isolate 3D7))
Explore Q8ILL2 
Go to UniProtKB:  Q8ILL2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8ILL2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L13, putative202Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8IJZ7 (Plasmodium falciparum (isolate 3D7))
Explore Q8IJZ7 
Go to UniProtKB:  Q8IJZ7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IJZ7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L13215Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8IAX6 (Plasmodium falciparum (isolate 3D7))
Explore Q8IAX6 
Go to UniProtKB:  Q8IAX6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IAX6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L23, putative139Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8IE09 (Plasmodium falciparum (isolate 3D7))
Explore Q8IE09 
Go to UniProtKB:  Q8IE09
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IE09
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L14, putative165Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8ILE8 (Plasmodium falciparum (isolate 3D7))
Explore Q8ILE8 
Go to UniProtKB:  Q8ILE8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8ILE8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27a, putative148Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for C6KT23 (Plasmodium falciparum (isolate 3D7))
Explore C6KT23 
Go to UniProtKB:  C6KT23
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupC6KT23
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L15205Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for C0H4A6 (Plasmodium falciparum (isolate 3D7))
Explore C0H4A6 
Go to UniProtKB:  C0H4A6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupC0H4A6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L10, putative219Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8ILV2 (Plasmodium falciparum (isolate 3D7))
Explore Q8ILV2 
Go to UniProtKB:  Q8ILV2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8ILV2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L5, putative294Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8ILL3 (Plasmodium falciparum (isolate 3D7))
Explore Q8ILL3 
Go to UniProtKB:  Q8ILL3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8ILL3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L18-2, putative187Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for C0H5G3 (Plasmodium falciparum (isolate 3D7))
Explore C0H5G3 
Go to UniProtKB:  C0H5G3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupC0H5G3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L19182Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for C6KSY6 (Plasmodium falciparum (isolate 3D7))
Explore C6KSY6 
Go to UniProtKB:  C6KSY6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupC6KSY6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L18a184Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8IDS6 (Plasmodium falciparum (isolate 3D7))
Explore Q8IDS6 
Go to UniProtKB:  Q8IDS6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IDS6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L21161Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8ILK3 (Plasmodium falciparum (isolate 3D7))
Explore Q8ILK3 
Go to UniProtKB:  Q8ILK3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8ILK3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L17, putative203Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8IDI5 (Plasmodium falciparum (isolate 3D7))
Explore Q8IDI5 
Go to UniProtKB:  Q8IDI5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IDI5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L22, putative139Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8IB51 (Plasmodium falciparum (isolate 3D7))
Explore Q8IB51 
Go to UniProtKB:  Q8IB51
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IB51
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L23190Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8IE82 (Plasmodium falciparum (isolate 3D7))
Explore Q8IE82 
Go to UniProtKB:  Q8IE82
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IE82
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L26, putative126Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for O77364 (Plasmodium falciparum (isolate 3D7))
Explore O77364 
Go to UniProtKB:  O77364
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO77364
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L24, putativeAA [auth 0]162Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8IEM3 (Plasmodium falciparum (isolate 3D7))
Explore Q8IEM3 
Go to UniProtKB:  Q8IEM3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IEM3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27BA [auth 1]146Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8IKM5 (Plasmodium falciparum (isolate 3D7))
Explore Q8IKM5 
Go to UniProtKB:  Q8IKM5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IKM5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L28CA [auth 2]127Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8IHU0 (Plasmodium falciparum (isolate 3D7))
Explore Q8IHU0 
Go to UniProtKB:  Q8IHU0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IHU0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L35, putativeDA [auth 3]124Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8IIB4 (Plasmodium falciparum (isolate 3D7))
Explore Q8IIB4 
Go to UniProtKB:  Q8IIB4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IIB4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L29, putativeEA [auth 4]67Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for C6S3J6 (Plasmodium falciparum (isolate 3D7))
Explore C6S3J6 
Go to UniProtKB:  C6S3J6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupC6S3J6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L7, putativeFA [auth 5]257Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for O97250 (Plasmodium falciparum (isolate 3D7))
Explore O97250 
Go to UniProtKB:  O97250
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO97250
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L30e, putativeGA [auth 6]108Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8IJK8 (Plasmodium falciparum (isolate 3D7))
Explore Q8IJK8 
Go to UniProtKB:  Q8IJK8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IJK8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L31HA [auth 7]120Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8I463 (Plasmodium falciparum (isolate 3D7))
Explore Q8I463 
Go to UniProtKB:  Q8I463
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8I463
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L32IA [auth 8]131Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8I3B0 (Plasmodium falciparum (isolate 3D7))
Explore Q8I3B0 
Go to UniProtKB:  Q8I3B0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8I3B0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L35Ae, putativeJA [auth 9]140Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8IHT9 (Plasmodium falciparum (isolate 3D7))
Explore Q8IHT9 
Go to UniProtKB:  Q8IHT9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IHT9
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L34KA [auth a]150Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8IBY4 (Plasmodium falciparum (isolate 3D7))
Explore Q8IBY4 
Go to UniProtKB:  Q8IBY4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IBY4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L36LA [auth b]112Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8I713 (Plasmodium falciparum (isolate 3D7))
Explore Q8I713 
Go to UniProtKB:  Q8I713
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8I713
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L37MA [auth c]92Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for C0H4L5 (Plasmodium falciparum (isolate 3D7))
Explore C0H4L5 
Go to UniProtKB:  C0H4L5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupC0H4L5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L38NA [auth d]87Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8II62 (Plasmodium falciparum (isolate 3D7))
Explore Q8II62 
Go to UniProtKB:  Q8II62
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8II62
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L39OA [auth e]51Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for C0H4H3 (Plasmodium falciparum (isolate 3D7))
Explore C0H4H3 
Go to UniProtKB:  C0H4H3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupC0H4H3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-60S ribosomal protein L40PA [auth f]128Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for Q8ID50 (Plasmodium falciparum (isolate 3D7))
Explore Q8ID50 
Go to UniProtKB:  Q8ID50
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8ID50
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L41QA [auth g]39Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for C6S3G4 (Plasmodium falciparum (isolate 3D7))
Explore C6S3G4 
Go to UniProtKB:  C6S3G4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupC6S3G4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L37aRA [auth h]96Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for O96184 (Plasmodium falciparum (isolate 3D7))
Explore O96184 
Go to UniProtKB:  O96184
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO96184
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L44SA [auth i]104Plasmodium falciparum 3D7Mutation(s): 0 
UniProt
Find proteins for O97231 (Plasmodium falciparum (isolate 3D7))
Explore O97231 
Go to UniProtKB:  O97231
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO97231
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains LengthOrganismImage
28S ribosomal RNA3,788Plasmodium falciparum 3D7
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains LengthOrganismImage
5S ribosomal RNA119Plasmodium falciparum 3D7
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains LengthOrganismImage
5.8S ribosomal RNA159Plasmodium falciparum 3D7
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
YMZ
Query on YMZ

Download Ideal Coordinates CCD File 
BH [auth K],
TA [auth A]
Mefloquine
C17 H16 F6 N2 O
XEEQGYMUWCZPDN-SWLSCSKDSA-N
ZN
Query on ZN

Download Ideal Coordinates CCD File 
DH [auth a],
EH [auth c],
FH [auth f],
GH [auth h],
HH [auth i]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
Query on MG

Download Ideal Coordinates CCD File 
AB [auth A]
AC [auth A]
AD [auth A]
AE [auth A]
AF [auth A]
AB [auth A],
AC [auth A],
AD [auth A],
AE [auth A],
AF [auth A],
AG [auth A],
AH [auth C],
BB [auth A],
BC [auth A],
BD [auth A],
BE [auth A],
BF [auth A],
BG [auth A],
CB [auth A],
CC [auth A],
CD [auth A],
CE [auth A],
CF [auth A],
CG [auth A],
CH [auth M],
DB [auth A],
DC [auth A],
DD [auth A],
DE [auth A],
DF [auth A],
DG [auth A],
EB [auth A],
EC [auth A],
ED [auth A],
EE [auth A],
EF [auth A],
EG [auth A],
FB [auth A],
FC [auth A],
FD [auth A],
FE [auth A],
FF [auth A],
FG [auth A],
GB [auth A],
GC [auth A],
GD [auth A],
GE [auth A],
GF [auth A],
GG [auth A],
HB [auth A],
HC [auth A],
HD [auth A],
HE [auth A],
HF [auth A],
HG [auth A],
IB [auth A],
IC [auth A],
ID [auth A],
IE [auth A],
IF [auth A],
IG [auth A],
JB [auth A],
JC [auth A],
JD [auth A],
JE [auth A],
JF [auth A],
JG [auth A],
KB [auth A],
KC [auth A],
KD [auth A],
KE [auth A],
KF [auth A],
KG [auth A],
LB [auth A],
LC [auth A],
LD [auth A],
LE [auth A],
LF [auth A],
LG [auth A],
MB [auth A],
MC [auth A],
MD [auth A],
ME [auth A],
MF [auth A],
MG [auth A],
NB [auth A],
NC [auth A],
ND [auth A],
NE [auth A],
NF [auth A],
NG [auth A],
OB [auth A],
OC [auth A],
OD [auth A],
OE [auth A],
OF [auth A],
OG [auth A],
PB [auth A],
PC [auth A],
PD [auth A],
PE [auth A],
PF [auth A],
PG [auth A],
QB [auth A],
QC [auth A],
QD [auth A],
QE [auth A],
QF [auth A],
QG [auth A],
RB [auth A],
RC [auth A],
RD [auth A],
RE [auth A],
RF [auth A],
RG [auth A],
SB [auth A],
SC [auth A],
SD [auth A],
SE [auth A],
SF [auth A],
SG [auth A],
TB [auth A],
TC [auth A],
TD [auth A],
TE [auth A],
TF [auth A],
TG [auth B],
UA [auth A],
UB [auth A],
UC [auth A],
UD [auth A],
UE [auth A],
UF [auth A],
UG [auth B],
VA [auth A],
VB [auth A],
VC [auth A],
VD [auth A],
VE [auth A],
VF [auth A],
VG [auth B],
WA [auth A],
WB [auth A],
WC [auth A],
WD [auth A],
WE [auth A],
WF [auth A],
WG [auth C],
XA [auth A],
XB [auth A],
XC [auth A],
XD [auth A],
XE [auth A],
XF [auth A],
XG [auth C],
YA [auth A],
YB [auth A],
YC [auth A],
YD [auth A],
YE [auth A],
YF [auth A],
YG [auth C],
ZA [auth A],
ZB [auth A],
ZC [auth A],
ZD [auth A],
ZE [auth A],
ZF [auth A],
ZG [auth C]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION1.3
MODEL REFINEMENTREFMAC5.8

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
NHMRCAustraliaAPP1024678
NHMRCAustraliaAPP1053801
Medical Research Council (United Kingdom)United KingdomMC_UP_A025_1013
Medical Research Council (United Kingdom)United KingdomMC_U105184332
Wellcome TrustUnited KingdomWT096570
Wellcome TrustUnited Kingdom100993/Z/13/Z
Human Frontier Science ProgramUnited KingdomRGY0071/2011
Department of Industry, Innovation, Science, Research and Tertiary Education, Australian Government|Australian Research CouncilAustraliaFT100100112

Revision History  (Full details and data files)

  • Version 1.0: 2017-03-01
    Type: Initial release
  • Version 1.1: 2017-03-22
    Changes: Database references
  • Version 1.2: 2017-08-30
    Changes: Author supporting evidence, Data collection
  • Version 1.3: 2018-10-17
    Changes: Data collection, Refinement description
  • Version 1.4: 2019-12-11
    Changes: Advisory, Derived calculations, Other