2J0H
L-ficolin complexed to acetyl-choline
- PDB DOI: https://doi.org/10.2210/pdb2J0H/pdb
- Classification: LECTIN
- Organism(s): Homo sapiens
- Expression System: Trichoplusia ni
- Mutation(s): No 
- Deposited: 2006-08-03 Released: 2007-01-23 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.85 Å
- R-Value Free: 0.275 
- R-Value Work: 0.210 
- R-Value Observed: 0.213 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
FICOLIN-2 | 218 | Homo sapiens | Mutation(s): 0  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q15485 (Homo sapiens) Explore Q15485  Go to UniProtKB:  Q15485 | |||||
PHAROS:  Q15485 GTEx:  ENSG00000160339  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q15485 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ACH Query on ACH | J [auth A], K [auth B], M [auth C], P [auth E], R [auth F] | ACETYLCHOLINE C7 H16 N O2 OIPILFWXSMYKGL-UHFFFAOYSA-N | |||
CA Query on CA | I [auth A] L [auth B] N [auth C] O [auth D] Q [auth E] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.85 Å
- R-Value Free: 0.275 
- R-Value Work: 0.210 
- R-Value Observed: 0.213 
- Space Group: P 32
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 97.06 | α = 90 |
b = 97.06 | β = 90 |
c = 140 | γ = 120 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
XDS | data reduction |
XSCALE | data scaling |
AMoRE | phasing |
Entry History 
Deposition Data
- Released Date: 2007-01-23  Deposition Author(s): Garlatti, V., Gaboriaud, C.
Revision History (Full details and data files)
- Version 1.0: 2007-01-23
Type: Initial release - Version 1.1: 2011-05-08
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2019-04-03
Changes: Advisory, Data collection, Derived calculations, Other, Source and taxonomy - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Other, Structure summary - Version 2.1: 2023-12-13
Changes: Advisory, Data collection, Database references, Refinement description, Structure summary