2J0G

L-ficolin complexed to N-acetyl-mannosamine


X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 96.94 α = 90
b = 96.94 β = 90
c = 139.47 γ = 120
Symmetry
Space Group P 32

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC CCD -- 2005-04-21
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID29 -- ESRF ID29

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.8 20 97.6 0.08 -- -- 3.2 -- 33923 -- 0.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
OTHER 2.85 15.0 -- -- -- 31942 1681 100.0 -- 0.196 0.193 0.248 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.85 2.95 -- 163 3089 0.31 0.384 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 40.37
Anisotropic B[1][1] -0.61
Anisotropic B[1][2] -0.3
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.61
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.91
RMS Deviations
Key Refinement Restraint Deviation
r_nbd_refined 0.252
r_chiral_restr 0.098
r_bond_refined_d 0.011
r_nbtor_refined 0.336
r_scangle_it 1.58
r_dihedral_angle_3_deg 18.408
r_dihedral_angle_2_deg 29.768
r_angle_refined_deg 1.394
r_symmetry_hbond_refined 0.263
r_dihedral_angle_4_deg 20.552
r_mcangle_it 0.998
r_xyhbond_nbd_refined 0.194
r_mcbond_it 0.596
r_symmetry_vdw_refined 0.294
r_gen_planes_refined 0.004
r_dihedral_angle_1_deg 6.202
r_scbond_it 1.066
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 10328
Nucleic Acid Atoms 0
Heterogen Atoms 186
Solvent Atoms 46

Software

Software
Software Name Purpose
REFMAC refinement version: 5.2.0019