X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 96.08 α = 90
b = 96.08 β = 90
c = 140.98 γ = 120
Symmetry
Space Group P 32

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC CCD -- 2006-03-19
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID14-1 -- ESRF ID14-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.35 19.95 98.1 0.09 -- -- 4.6 -- 58888 -- 0.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
OTHER 2.35 19.95 -- -- -- 56804 2990 100.0 -- 0.198 0.196 0.242 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.35 2.43 -- 260 4942 0.266 0.35 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 45.98
Anisotropic B[1][1] 1.06
Anisotropic B[1][2] 0.53
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 1.06
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -1.59
RMS Deviations
Key Refinement Restraint Deviation
r_nbtor_refined 0.328
r_gen_planes_refined 0.005
r_symmetry_vdw_refined 0.255
r_xyhbond_nbd_refined 0.211
r_dihedral_angle_3_deg 16.904
r_bond_refined_d 0.011
r_chiral_restr 0.091
r_symmetry_hbond_refined 0.334
r_angle_refined_deg 1.303
r_mcangle_it 1.058
r_scangle_it 1.74
r_dihedral_angle_4_deg 21.227
r_dihedral_angle_1_deg 5.943
r_mcbond_it 0.679
r_nbd_refined 0.237
r_scbond_it 1.231
r_dihedral_angle_2_deg 27.979
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 10125
Nucleic Acid Atoms 0
Heterogen Atoms 215
Solvent Atoms 294

Software

Software
Software Name Purpose
REFMAC refinement version: 5.2.0019
XDS data reduction
XSCALE data scaling