2W98

CRYSTAL STRUCTURE OF HUMAN ZINC-BINDING ALCOHOL DEHYDROGENASE 1 (ZADH1) IN TERNARY COMPLEX WITH NADP AND PHENYLBUTAZONE


X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Details 2.1M NA(MALATE)

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 141.01 α = 90
b = 82.79 β = 99.77
c = 69.1 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARRESEARCH -- 2008-08-27
Diffraction Radiation
Monochromator Protocol
SI (111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X10SA -- SLS X10SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.85 53.37 99.2 0.05 -- -- 2.9 -- 66348 -- 2.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.85 1.95 95.5 0.16 -- 5.2 2.3 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.85 53.4 -- -- -- 64962 1319 99.2 -- 0.159 0.158 0.188 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.85 1.9 -- 91 4457 0.205 0.256 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 8.15
Anisotropic B[1][1] -0.53
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 1.14
Anisotropic B[2][2] 0.11
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.82
RMS Deviations
Key Refinement Restraint Deviation
r_angle_refined_deg 1.591
r_scangle_it 6.681
r_gen_planes_other 0.002
r_mcbond_it 1.349
r_mcangle_it 2.541
r_bond_other_d 0.002
r_chiral_restr 0.113
r_scbond_it 4.335
r_dihedral_angle_2_deg 40.427
r_dihedral_angle_3_deg 11.229
r_dihedral_angle_1_deg 5.591
r_dihedral_angle_4_deg 15.235
r_bond_refined_d 0.012
r_angle_other_deg 0.895
r_gen_planes_refined 0.015
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5382
Nucleic Acid Atoms 0
Heterogen Atoms 293
Solvent Atoms 493

Software

Software
Software Name Purpose
REFMAC refinement version: 5.5.0055
MOSFLM data reduction
SCALA data scaling
PHASER phasing