X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 277.0
Details 100 mM Tris pH 8.5, 25-125 mM KCl, 32.5-34% PEG 400, 0.5% 6-aminohexanoic acid

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 129.15 α = 90
b = 162.83 β = 90
c = 140.41 γ = 90
Symmetry
Space Group C 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- 2015-06-20
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 24-ID-E 0.979 APS 24-ID-E

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.14 53.17 99.9 0.1261 -- -- 17.7 -- 49873 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.14 53.17 -- 1.44 -- 49873 2507 99.9 -- 0.24 0.238 0.27 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.1401 3.2005 -- 137 2637 0.3866 0.389 -- 100.0
X Ray Diffraction 3.2005 3.2658 -- 139 2605 0.3797 0.444 -- 100.0
X Ray Diffraction 3.2658 3.3368 -- 138 2656 0.386 0.393 -- 100.0
X Ray Diffraction 3.3368 3.4144 -- 140 2626 0.3815 0.3819 -- 100.0
X Ray Diffraction 3.4144 3.4998 -- 141 2650 0.3301 0.3692 -- 100.0
X Ray Diffraction 3.4998 3.5944 -- 137 2633 0.331 0.3475 -- 100.0
X Ray Diffraction 3.5944 3.7001 -- 144 2643 0.2945 0.3345 -- 100.0
X Ray Diffraction 3.7001 3.8195 -- 140 2634 0.2663 0.3142 -- 100.0
X Ray Diffraction 3.8195 3.956 -- 138 2613 0.2487 0.281 -- 100.0
X Ray Diffraction 3.956 4.1143 -- 138 2632 0.2307 0.346 -- 100.0
X Ray Diffraction 4.1143 4.3015 -- 136 2650 0.2083 0.2242 -- 100.0
X Ray Diffraction 4.3015 4.5282 -- 142 2641 0.1943 0.2293 -- 100.0
X Ray Diffraction 4.5282 4.8117 -- 136 2615 0.182 0.2474 -- 100.0
X Ray Diffraction 4.8117 5.1829 -- 143 2656 0.1893 0.2059 -- 100.0
X Ray Diffraction 5.1829 5.7039 -- 138 2613 0.2152 0.2975 -- 100.0
X Ray Diffraction 5.7039 6.528 -- 142 2647 0.248 0.3008 -- 100.0
X Ray Diffraction 6.528 8.2198 -- 140 2634 0.2293 0.2435 -- 100.0
X Ray Diffraction 8.2198 53.1752 -- 138 2581 0.2067 0.2144 -- 98.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.006
f_dihedral_angle_d 10.415
f_bond_d 0.022
f_chiral_restr 0.217
f_angle_d 0.798
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7526
Nucleic Acid Atoms 0
Heterogen Atoms 104
Solvent Atoms 1

Software

Software
Software Name Purpose
PHENIX refinement version: (DEV_2000: ???)
XDS data reduction
Aimless data scaling
PHASER phasing