X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 293.0
Details 100 mM Na acetate pH4 12-15% PEG4K 200 mM NaSCN 16% glycerol 2% DMSO

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 180.28 α = 90
b = 132.97 β = 102.1
c = 158.98 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 80
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M-F -- 2011-11-30
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.97 SOLEIL PROXIMA 1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.1 49 99.0 -- -- -- 3.5 -- 66286 -- -- 94.16
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.1 20.0 -- 0.0 -- 65133 3286 97.73 -- 0.1944 0.1939 0.2042 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.1 3.18 -- 215 4583 0.2624 0.281 -- 97.85
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 101.8
Anisotropic B[1][1] -10.9207
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 26.7136
Anisotropic B[2][2] -5.2597
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 16.1804
RMS Deviations
Key Refinement Restraint Deviation
t_other_torsion 19.48
t_angle_deg 0.92
t_omega_torsion 2.18
t_bond_d 0.007
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.439
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 12610
Nucleic Acid Atoms 0
Heterogen Atoms 247
Solvent Atoms 122

Software

Software
Software Name Purpose
BUSTER refinement version: 2.10.2
XDS data reduction
Aimless data scaling
REFMAC phasing