X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7
Temperature 294.0
Details 40 mM Sodium Cacodylate pH 7.0, 80 mM NaCl, 20 mM BaCl2, 5 mM CdCl2, 12 mM spermine hydrochloride, 12% 2-methyl-2,4-pentanediol

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 73.14 α = 90
b = 73.14 β = 90
c = 117.61 γ = 120
Symmetry
Space Group P 31

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- 2015-10-14
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 5.0.1 0.988 ALS 5.0.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.89 50 99.0 -- -- -- 5.5 -- 56296 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.89 1.92 -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.891 43.096 -- 4.6 -- 56199 3133 99.92 -- 0.1468 0.14 0.1737 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.8918 1.9244 -- 165 2709 0.2572 0.2933 -- 94.0
X Ray Diffraction 1.9244 1.9594 -- 135 2606 0.2499 0.2542 -- 95.0
X Ray Diffraction 1.9594 1.9971 -- 158 2654 0.2466 0.2697 -- 94.0
X Ray Diffraction 1.9971 2.0378 -- 161 2710 0.2352 0.2656 -- 94.0
X Ray Diffraction 2.0378 2.0821 -- 148 2624 0.2291 0.2796 -- 95.0
X Ray Diffraction 2.0821 2.1306 -- 171 2674 0.2197 0.2789 -- 94.0
X Ray Diffraction 2.1306 2.1838 -- 179 2589 0.2196 0.2739 -- 94.0
X Ray Diffraction 2.1838 2.2429 -- 151 2640 0.2093 0.2278 -- 95.0
X Ray Diffraction 2.2429 2.3089 -- 211 2646 0.2048 0.2592 -- 93.0
X Ray Diffraction 2.3089 2.3834 -- 154 2641 0.1941 0.2544 -- 94.0
X Ray Diffraction 2.3834 2.4685 -- 145 2668 0.191 0.2622 -- 95.0
X Ray Diffraction 2.4685 2.5674 -- 142 2623 0.1868 0.2227 -- 95.0
X Ray Diffraction 2.5674 2.6842 -- 155 2682 0.1846 0.2444 -- 95.0
X Ray Diffraction 2.6842 2.8256 -- 151 2688 0.1748 0.2205 -- 95.0
X Ray Diffraction 2.8256 3.0026 -- 138 2622 0.1549 0.1884 -- 95.0
X Ray Diffraction 3.0026 3.2343 -- 133 2695 0.1358 0.1583 -- 95.0
X Ray Diffraction 3.2343 3.5595 -- 189 2615 0.1255 0.1514 -- 93.0
X Ray Diffraction 3.5595 4.074 -- 149 2679 0.1046 0.1259 -- 95.0
X Ray Diffraction 4.074 5.1306 -- 147 2651 0.0942 0.1214 -- 95.0
X Ray Diffraction 5.1306 36.5773 -- 151 2637 0.0971 0.1393 -- 94.0
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 1.656
f_chiral_restr 0.074
f_dihedral_angle_d 13.264
f_bond_d 0.013
f_plane_restr 0.01
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 0
Nucleic Acid Atoms 4244
Heterogen Atoms 121
Solvent Atoms 343

Software

Software
Software Name Purpose
PHENIX refinement version: 1.12_2829
HKL-2000 data reduction
HKL-2000 data scaling
PHASER phasing