6CIO

Pyruvate:ferredoxin oxidoreductase from Moorella thermoacetica with lactyl-TPP bound


X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 298.0
Details 15-16% (w/v) PEG 4000, 0.21 M (NH4)2SO4 and 0.10 M MES pH 6.0

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 340.39 α = 90
b = 107.1 β = 109.67
c = 239.56 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2015-06-21
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 24-ID-C 0.97910 APS 24-ID-C

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3 50 97.4 -- 0.16 -- 4.9 -- 157684 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.0 3.11 -- -- 0.793 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.003 48.454 -- 1.34 -- 157125 7867 96.83 -- 0.209 0.2074 0.2412 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.0033 3.0375 -- 215 4064 0.3483 0.3927 -- 79.0
X Ray Diffraction 3.0375 3.0732 -- 255 4822 0.3414 0.3812 -- 94.0
X Ray Diffraction 3.0732 3.1107 -- 261 4964 0.3216 0.3473 -- 98.0
X Ray Diffraction 3.1107 3.15 -- 270 5020 0.3058 0.3345 -- 98.0
X Ray Diffraction 3.15 3.1915 -- 267 5019 0.2954 0.3698 -- 98.0
X Ray Diffraction 3.1915 3.2352 -- 263 5062 0.2864 0.311 -- 98.0
X Ray Diffraction 3.2352 3.2814 -- 269 5011 0.2804 0.3151 -- 99.0
X Ray Diffraction 3.2814 3.3304 -- 268 5001 0.2735 0.2985 -- 98.0
X Ray Diffraction 3.3304 3.3824 -- 268 5052 0.2653 0.2949 -- 98.0
X Ray Diffraction 3.3824 3.4378 -- 263 5035 0.2687 0.302 -- 98.0
X Ray Diffraction 3.4378 3.4971 -- 263 5034 0.2618 0.3118 -- 98.0
X Ray Diffraction 3.4971 3.5607 -- 266 4901 0.2538 0.2589 -- 97.0
X Ray Diffraction 3.5607 3.6291 -- 244 4739 0.2369 0.2515 -- 93.0
X Ray Diffraction 3.6291 3.7032 -- 267 5094 0.2249 0.2627 -- 99.0
X Ray Diffraction 3.7032 3.7837 -- 269 5045 0.2179 0.2763 -- 99.0
X Ray Diffraction 3.7837 3.8716 -- 270 5070 0.2019 0.2516 -- 99.0
X Ray Diffraction 3.8716 3.9684 -- 266 5106 0.1962 0.2215 -- 99.0
X Ray Diffraction 3.9684 4.0757 -- 260 5000 0.1911 0.213 -- 99.0
X Ray Diffraction 4.0757 4.1955 -- 262 5078 0.1871 0.2255 -- 99.0
X Ray Diffraction 4.1955 4.3309 -- 269 5024 0.1776 0.1981 -- 98.0
X Ray Diffraction 4.3309 4.4856 -- 255 4780 0.1707 0.2165 -- 93.0
X Ray Diffraction 4.4856 4.665 -- 275 5096 0.1658 0.1961 -- 99.0
X Ray Diffraction 4.665 4.8771 -- 265 5128 0.1573 0.1859 -- 99.0
X Ray Diffraction 4.8771 5.134 -- 265 5083 0.1565 0.1931 -- 99.0
X Ray Diffraction 5.134 5.4553 -- 274 5095 0.1689 0.215 -- 99.0
X Ray Diffraction 5.4553 5.8758 -- 249 4901 0.1754 0.2106 -- 95.0
X Ray Diffraction 5.8758 6.4659 -- 264 5072 0.1713 0.2065 -- 98.0
X Ray Diffraction 6.4659 7.3987 -- 270 5136 0.1723 0.2056 -- 99.0
X Ray Diffraction 7.3987 9.3107 -- 268 4992 0.1584 0.1825 -- 95.0
X Ray Diffraction 9.3107 48.4599 -- 247 4834 0.1846 0.2112 -- 90.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.004
f_chiral_restr 0.061
f_bond_d 0.003
f_angle_d 0.554
f_dihedral_angle_d 21.133
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 53163
Nucleic Acid Atoms 0
Heterogen Atoms 365
Solvent Atoms 54

Software

Software
Software Name Purpose
PHENIX refinement version: (1.13_2998: ???)
HKL-2000 data reduction
HKL-2000 data scaling
PHENIX phasing

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