X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 293.0
Details 2 % v/v Tacsimate pH 5.0, 0.1 M sodium citrate tribasic dihydrate pH 5.6, 16 % w/v PEG 3350

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 71.03 α = 90
b = 76.94 β = 90
c = 80.05 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 S 6M -- 2013-12-12
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON BESSY BEAMLINE 14.1 0.918409 BESSY 14.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.92 38.47 98.8 -- -- -- 3.67 -- 33793 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.92 2.04 -- -- -- 2.11 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.92 38.47 -- 1.36 -- 33784 2028 98.87 -- 0.1898 0.1876 0.224 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9201 1.9681 -- 136 2129 0.2945 0.3571 -- 94.0
X Ray Diffraction 1.9681 2.0213 -- 143 2238 0.2587 0.3084 -- 99.0
X Ray Diffraction 2.0213 2.0807 -- 142 2229 0.2346 0.3074 -- 100.0
X Ray Diffraction 2.0807 2.1479 -- 145 2266 0.2281 0.2595 -- 99.0
X Ray Diffraction 2.1479 2.2247 -- 144 2254 0.216 0.266 -- 99.0
X Ray Diffraction 2.2247 2.3137 -- 143 2238 0.2006 0.2485 -- 99.0
X Ray Diffraction 2.3137 2.419 -- 143 2246 0.2039 0.2747 -- 99.0
X Ray Diffraction 2.419 2.5465 -- 146 2288 0.207 0.252 -- 100.0
X Ray Diffraction 2.5465 2.706 -- 144 2254 0.2054 0.2727 -- 100.0
X Ray Diffraction 2.706 2.9149 -- 147 2296 0.1997 0.3025 -- 100.0
X Ray Diffraction 2.9149 3.2081 -- 146 2301 0.1968 0.2671 -- 100.0
X Ray Diffraction 3.2081 3.672 -- 147 2299 0.1733 0.2085 -- 99.0
X Ray Diffraction 3.672 4.6251 -- 148 2317 0.1464 0.153 -- 99.0
X Ray Diffraction 4.6251 38.4777 -- 154 2401 0.1658 0.1612 -- 98.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.049
f_plane_restr 0.004
f_dihedral_angle_d 21.43
f_bond_d 0.006
f_angle_d 0.689
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2971
Nucleic Acid Atoms 0
Heterogen Atoms 21
Solvent Atoms 239

Software

Software
Software Name Purpose
PHENIX refinement version: (1.13_2998: ???)
XDS data reduction
XSCALE data scaling
PHASER phasing