X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8.5
Temperature 289.0
Details 2.0 M ammonium dihydrogen phosphate, 0.1 M Tris-Cl

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 139.21 α = 90
b = 139.21 β = 90
c = 139.21 γ = 90
Symmetry
Space Group P 43 3 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 X 6M -- 2018-11-13
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 19-ID 0.97927 APS 19-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 50 100.0 0.079 -- -- 30.2 -- 36844 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.9 1.93 99.7 1.686 -- -- 9.7 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.903 41.975 -- 1.35 -- 35311 1721 96.12 -- 0.1678 0.1668 0.1862 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9026 1.9586 -- 94 1504 0.2698 0.2999 0.0 53.0
X Ray Diffraction 1.9586 2.0218 -- 139 2849 0.2059 0.2391 0.0 100.0
X Ray Diffraction 2.0218 2.094 -- 134 2872 0.1786 0.2256 0.0 100.0
X Ray Diffraction 2.094 2.1779 -- 137 2872 0.1584 0.1735 0.0 100.0
X Ray Diffraction 2.1779 2.277 -- 127 2865 0.153 0.2 0.0 100.0
X Ray Diffraction 2.277 2.397 -- 152 2881 0.1593 0.1949 0.0 100.0
X Ray Diffraction 2.397 2.5472 -- 150 2877 0.1685 0.1848 0.0 100.0
X Ray Diffraction 2.5472 2.7438 -- 145 2894 0.1713 0.2088 0.0 100.0
X Ray Diffraction 2.7438 3.0199 -- 150 2925 0.1763 0.2157 0.0 100.0
X Ray Diffraction 3.0199 3.4567 -- 170 2917 0.1692 0.183 0.0 100.0
X Ray Diffraction 3.4567 4.3543 -- 152 2976 0.1426 0.145 0.0 100.0
X Ray Diffraction 4.3543 41.9848 -- 171 3158 0.1679 0.1698 0.0 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 25.1092
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2572
Nucleic Acid Atoms 0
Heterogen Atoms 21
Solvent Atoms 275

Software

Software
Software Name Purpose
SCALEPACK data scaling
PHENIX refinement version: 1.15.2_3472
PDB_EXTRACT data extraction version: 3.25
HKL-3000 data reduction
HKL-3000 phasing