Sequence Similarity Clusters for the Entities in PDB 1Q3V

Entity #1 | Chains: C,G
loxP DNA dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: X,Y
loxP DNA dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D,H
loxP DNA dna, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A,B,E,F
Cre recombinase protein, length: 347 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 12 1420
95 % 24 24 984 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.8
PDBFlex
90 % 24 24 1025
70 % 24 24 1052
50 % 24 24 1091
40 % 24 24 1123
30 % 24 24 1156

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1F44 3 A CRE RECOMBINASE 10678
2 1XO0 3 A, B Recombinase CRE 10678
3 3C29 1 A, B, G, H Recombinase cre 10678
4 3MGV 1 A, B, C, D Recombinase cre 10678
5 4CRX 2 A, B PROTEIN (CRE RECOMBINASE) 10678
6 1KBU 3 A, B CRE RECOMBINASE LYS86 AND LYS201 INTERACTIONS WITH THE SCISSILE BASE SUGGEST HOW STRAND EXCHANGE ORDER IS DETERMINED 10678
7 1CRX 4 A, B CRE RECOMBINASE 10678
8 1DRG 3 A CRE RECOMBINASE RESIDUES 21-198, 209-343 10678
9 2CRX 2 A, B PROTEIN (CRE RECOMBINASE) 10678
10 3CRX 5 A, B CRE RECOMBINASE 10678
11 1MA7 3 A, B CRE RECOMBINASE 10678
12 1PVP 3 A, B Recombinase CRE Cre site-specific recombinase mutant (I174A, T258L, R259S, E262H, E266G) 10678
13 2HOF 3 A, B Recombinase cre 10678
14 1PVR 3 A, B Recombinase CRE SELECTED CRE SITE-SPECIFIC RECOMBINASE MUTANT (I174L,T258N, R259S, E262G, E266G) 10678
15 2HOI 3 A, B, G, H Recombinase Cre 10678
16 1XNS 3 A, B Recombinase CRE 10678
17 3C28 3 A, B Recombinase cre 10678
18 5CRX 2 A, B PROTEIN (BACTERIOPHAGE P1 CRE GENE) 10678
19 1PVQ 3 A, B Recombinase CRE SELECTED CRE SITE-SPECIFIC RECOMBINASE MUTANT (I174L,T258N, R259S, E262G, E266G) 10678
20 1Q3U 3 A, B, E, F Cre recombinase 10678
21 5U91 1 A, B, E, F Tre recombinase protein N terminal GAAA sequence is a cloning artifact. 32630
22 1NZB 3 A, B, E, F Cre recombinase 10678
23 1OUQ 4 A, B, E, F Cre recombinase 10678
24 1Q3V 4 A, B, E, F Cre recombinase 10678