Sequence Similarity Clusters for the Entities in PDB 1QZW

Entity #1 | Chains: B,D,F,H
7S RNA rna, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,C,E,G
Signal recognition 54 kDa protein protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13444
95 % 3 3 12600 Flexibility: Medium
Max RMSD: 7.8, Avg RMSD: 3.3
PDBFlex
90 % 3 3 12436
70 % 3 3 11797
50 % 6 6 6252
40 % 7 11 4278
30 % 9 20 2520

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures