Sequence Similarity Clusters for the Entities in PDB 1QZW

Entity #1 | Chains: B,D,F,H
7S RNA rna, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,C,E,G
Signal recognition 54 kDa protein protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13521
95 % 3 3 12700 Flexibility: Medium
Max RMSD: 7.8, Avg RMSD: 3.3
PDBFlex
90 % 3 3 12498
70 % 3 3 11881
50 % 6 6 6304
40 % 7 11 4292
30 % 9 20 2542

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures