1QZW

Crystal structure of the complete core of archaeal SRP and implications for inter-domain communication


Sequence Similarity Clusters for the Entities in PDB 1QZW

Entity #1 | Chains: B,D,F,H
7S RNA rna, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,C,E,G
Signal recognition 54 kDa protein protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 14003
95 % 3 3 13655
90 % 3 3 13463
70 % 3 3 12770
50 % 6 6 6487
40 % 7 11 4441
30 % 9 20 2642

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3DM5 1 A, B Signal recognition 54 kDa protein 2261
2 5L3Q 1 A, C Signal recognition particle 54 kDa protein The C-terminal M domain was degraded during crystallization 9606
3 2V3C 2 C, D SIGNAL RECOGNITION 54 KDA PROTEIN RESIDUES 3-427 2190
4 3NDB 2 B Signal recognition 54 kDa protein 2190
5 2FFH 1 A, B, C PROTEIN (FFH) THE EXPRESSION INSERT WAS GENERATED BY PCR RESIDUES 1-425 271
6 2XXA 1 A, C SIGNAL RECOGNITION PARTICLE PROTEIN RESIDUES 1-433 562 3.6.5.4 | Details
7 3KL4 1 A Signal recognition 54 kDa protein UNP residues 2-432 2287 3.6.5.4 | Details
8 1QZX 1 A, B Signal recognition 54 kDa protein 2287
9 1QZW 2 A, C, E, G Signal recognition 54 kDa protein 2287
10 6R6G 86 AB Signal recognition particle 54 kDa protein 9612
11 5NCO 37 i Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein 562
12 5GAG 35 i Signal recognition particle protein Ffh *****Notes: Less defined regions were replaced with UNK residues. Full sequence is below: MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRSMKGMMPPGFPGR 562
13 5GAH 35 i Signal recognition particle protein Ffh *****Notes: Less defined regions were replaced with UNK residues. Full sequence is below: MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRSMKGMMPPGFPGR 562
14 5GAF 35 i Signal recognition particle protein *****Notes: Less defined regions were replaced with UNK residues. Full sequence is below: MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRSMKGMMPPGFPGR 562
15 5GAD 35 i Signal recognition particle protein Ffh *****Notes: Less defined regions were replaced with UNK residues. Full sequence is below: MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRSMKGMMPPGFPGR 562
16 3JAN 48 z SRP54 SEE REMARK 999 9986
17 3JAJ 48 z SRP54 SEE REMARK 999 9986
18 4UE5 4 D SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN UNP RESIDUES 1-433 9612
19 2J28 8 9 SIGNAL RECOGNITION PARTICLE 54 562
20 2IY3 1 A Signal recognition particle protein,Signal recognition particle 54 kDa protein 2287