1QZW

Crystal structure of the complete core of archaeal SRP and implications for inter-domain communication


Sequence Similarity Clusters for the Entities in PDB 1QZW

Entity #1 | Chains: B,D,F,H
7S RNA rna, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,C,E,G
Signal recognition 54 kDa protein protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 14003
95 % 3 3 13655
90 % 3 3 13463
70 % 3 3 12770
50 % 6 6 6487
40 % 7 11 4441
30 % 9 20 2642

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3DM5 1 A, B Signal recognition 54 kDa protein 2261
2 5L3Q 1 A, C Signal recognition particle 54 kDa protein The C-terminal M domain was degraded during crystallization 9606
3 2V3C 2 C, D SIGNAL RECOGNITION 54 KDA PROTEIN RESIDUES 3-427 2190
4 3NDB 2 B Signal recognition 54 kDa protein 2190
5 3KL4 1 A Signal recognition 54 kDa protein UNP residues 2-432 2287 3.6.5.4 | Details
6 1QZX 1 A, B Signal recognition 54 kDa protein 2287
7 1QZW 2 A, C, E, G Signal recognition 54 kDa protein 2287
8 6R6G 86 AB Signal recognition particle 54 kDa protein 9612
9 3JAN 48 z SRP54 SEE REMARK 999 9986
10 3JAJ 48 z SRP54 SEE REMARK 999 9986
11 4UE5 4 D SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN UNP RESIDUES 1-433 9612