Sequence Similarity Clusters for the Entities in PDB 1SC7

Entity #1 | Chains: B
5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*T)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*(TGP)P*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D
5'-D(*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*CP*AP*AP*GP*TP*CP*TP*TP*TP*TP*T)-3' dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
DNA topoisomerase I protein, length: 592 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 12719
95 % 7 15 5524 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 1.5
PDBFlex
90 % 7 15 5572
70 % 7 15 5523
50 % 7 15 5331
40 % 7 15 5181
30 % 7 15 4971

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures