Sequence Similarity Clusters for the Entities in PDB 2W8L

Entity #1 | Chains: A
DNA POLYMERASE IV protein, length: 358 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 105 114 211
95 % 113 123 259 Flexibility: Low
Max RMSD: 16.3, Avg RMSD: 1.3
PDBFlex
90 % 113 123 271
70 % 114 124 315
50 % 124 135 343
40 % 124 135 359
30 % 124 135 374
Entity #2 | Chains: P
5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOC)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: T
5'-D(*TP*CP*AP*CP*N2GP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures