Sequence Similarity Clusters for the Entities in PDB 3C29

Entity #1 | Chains: A,B,G,H
Recombinase cre protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 1365
95 % 3 24 1008 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.8
PDBFlex
90 % 3 24 1052
70 % 3 24 1074
50 % 3 24 1113
40 % 3 24 1145
30 % 3 24 1188
Entity #2 | Chains: C
LoxP DNA, chain C, dna, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D,F
LoxP DNA, chain D,F dna, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: E
LoxP DNA, chain E dna, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures