3J9Y

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome


Sequence Similarity Clusters for the Entities in PDB 3J9Y

Entity #1 | Chains: a
16S ribosomal RNA rna, length: 1539 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: p
30S ribosomal protein S16 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 212 151
95 % 171 212 191
90 % 171 212 203
70 % 171 212 221
50 % 175 216 225
40 % 175 216 235
30 % 175 216 247
Entity #11 | Chains: q
30S ribosomal protein S17 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 211 144
95 % 170 211 182
90 % 170 211 194
70 % 174 215 213
50 % 174 215 223
40 % 174 215 234
30 % 174 215 245
Entity #12 | Chains: r
30S ribosomal protein S18 protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 136 156 207
95 % 138 160 268
90 % 138 160 279
70 % 144 166 308
50 % 144 166 362
40 % 144 166 380
30 % 144 166 395
Entity #13 | Chains: t
30S ribosomal protein S20 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 210 150
95 % 170 210 190
90 % 170 210 202
70 % 170 210 220
50 % 178 218 217
40 % 178 218 227
30 % 201 242 217
Entity #14 | Chains: u
30S ribosomal protein S21 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 155 209
95 % 137 155 272
90 % 137 155 286
70 % 142 160 311
50 % 142 160 369
40 % 142 160 388
30 % 142 160 401
Entity #15 | Chains: v
P-site fMet-tRNAfMet rna, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: x
mRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #17 | Chains: w
Tetracycline resistance protein TetM protein, length: 639 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 51866
95 % 2 3 30611
90 % 2 3 29419
70 % 2 4 20794
50 % 2 4 19537
40 % 2 4 17957
30 % 2 4 13868
Entity #18 | Chains: c
30S ribosomal protein S3 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 85 421
95 % 66 86 531
90 % 66 86 557
70 % 66 86 585
50 % 346 373 85
40 % 346 373 103
30 % 346 373 104
Entity #19 | Chains: g
30S ribosomal protein S7 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 74 474
95 % 169 208 196
90 % 169 208 211
70 % 54 74 689
50 % 54 74 725
40 % 54 74 756
30 % 54 74 791
Entity #2 | Chains: b
30S ribosomal protein S2 protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 168 207 153
95 % 168 207 192
90 % 168 207 205
70 % 176 215 214
50 % 525 575 29
40 % 530 581 34
30 % 530 581 39
Entity #20 | Chains: i
30S ribosomal protein S9 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 210 148
95 % 169 210 189
90 % 169 210 201
70 % 177 218 212
50 % 521 572 30
40 % 521 572 37
30 % 521 572 42
Entity #21 | Chains: j
30S ribosomal protein S10 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 213 141
95 % 174 214 176
90 % 178 218 184
70 % 182 222 201
50 % 534 583 25
40 % 534 583 32
30 % 570 621 31
Entity #22 | Chains: m
30S ribosomal protein S13 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 172 214 143
95 % 172 214 181
90 % 172 214 192
70 % 180 222 208
50 % 530 583 26
40 % 533 586 33
30 % 533 586 38
Entity #23 | Chains: n
30S ribosomal protein S14 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 27 2159
95 % 169 207 193
90 % 169 207 206
70 % 169 207 223
50 % 179 217 221
40 % 184 223 223
30 % 185 224 232
Entity #24 | Chains: s
30S ribosomal protein S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 210 147
95 % 170 210 188
90 % 170 210 198
70 % 178 218 211
50 % 532 584 24
40 % 532 584 31
30 % 532 584 37
Entity #25 | Chains: A
23S ribosomal RNA rna, length: 2903 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #26 | Chains: B
5S ribosomal RNA rna, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #27 | Chains: C
50S ribosomal protein L2 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 188 232 114
95 % 188 232 153
90 % 188 232 162
70 % 196 240 176
50 % 474 525 35
40 % 474 525 45
30 % 475 526 50
Entity #28 | Chains: D
50S ribosomal protein L3 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 197 244 110
95 % 197 244 148
90 % 197 244 156
70 % 205 252 171
50 % 478 531 37
40 % 482 535 42
30 % 482 536 46
Entity #29 | Chains: E
50S ribosomal protein L4 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 189 235 112
95 % 189 235 151
90 % 189 235 159
70 % 193 239 177
50 % 197 243 193
40 % 232 281 182
30 % 465 517 54
Entity #3 | Chains: d
30S ribosomal protein S4 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 210 145
95 % 171 211 183
90 % 171 211 195
70 % 179 219 207
50 % 179 219 216
40 % 538 589 30
30 % 538 589 35
Entity #30 | Chains: F
50S ribosomal protein L5 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 229 125
95 % 180 229 163
90 % 180 229 172
70 % 180 229 195
50 % 451 505 42
40 % 451 505 55
30 % 451 505 62
Entity #31 | Chains: G
50S ribosomal protein L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 224 129
95 % 178 224 168
90 % 178 224 177
70 % 178 224 198
50 % 186 232 203
40 % 455 512 50
30 % 458 516 55
Entity #32 | Chains: H
50S ribosomal protein L9 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 162 205 160
95 % 163 206 204
90 % 163 206 219
70 % 163 206 233
50 % 168 211 231
40 % 347 393 98
30 % 360 406 96
Entity #33 | Chains: I
50S ribosomal protein L11 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 144 194 162
95 % 144 194 215
90 % 144 194 228
70 % 148 198 236
50 % 217 294 146
40 % 219 298 161
30 % 219 299 167
Entity #34 | Chains: J
50S ribosomal protein L13 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 189 236 111
95 % 189 236 150
90 % 189 236 158
70 % 197 244 173
50 % 241 291 165
40 % 445 498 57
30 % 445 498 63
Entity #35 | Chains: K
50S ribosomal protein L14 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 227 123
95 % 179 227 160
90 % 179 227 169
70 % 187 235 181
50 % 469 528 34
40 % 469 528 43
30 % 469 528 48
Entity #36 | Chains: L
50S ribosomal protein L15 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 188 235 113
95 % 189 236 149
90 % 189 236 157
70 % 189 236 180
50 % 197 244 190
40 % 467 520 46
30 % 467 520 52
Entity #37 | Chains: M
50S ribosomal protein L16 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 162 208 158
95 % 174 220 174
90 % 174 220 183
70 % 182 228 193
50 % 459 511 40
40 % 459 511 51
30 % 459 511 58
Entity #38 | Chains: N
50S ribosomal protein L17 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 219 137
95 % 179 225 166
90 % 179 225 175
70 % 187 233 186
50 % 419 468 54
40 % 460 512 47
30 % 460 514 51
Entity #39 | Chains: O
50S ribosomal protein L18 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 223 132
95 % 177 223 170
90 % 177 223 179
70 % 177 223 200
50 % 444 495 50
40 % 428 476 72
30 % 428 476 75
Entity #4 | Chains: e
30S ribosomal protein S5 protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 199 159
95 % 171 212 180
90 % 171 212 191
70 % 179 220 206
50 % 526 579 27
40 % 526 579 35
30 % 526 579 40
Entity #40 | Chains: P
50S ribosomal protein L19 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 225 127
95 % 179 225 164
90 % 179 225 173
70 % 179 225 196
50 % 236 285 166
40 % 236 285 178
30 % 236 285 186
Entity #41 | Chains: Q
50S ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 226 124
95 % 179 226 161
90 % 179 226 171
70 % 187 234 183
50 % 462 515 38
40 % 469 523 44
30 % 469 523 49
Entity #42 | Chains: R
50S ribosomal protein L21 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 222 133
95 % 179 222 171
90 % 179 222 180
70 % 179 222 205
50 % 187 230 204
40 % 461 510 52
30 % 461 510 59
Entity #43 | Chains: S
50S ribosomal protein L22 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 225 128
95 % 179 225 165
90 % 179 225 174
70 % 187 233 184
50 % 430 484 52
40 % 430 484 70
30 % 430 484 73
Entity #44 | Chains: T
50S ribosomal protein L23 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 229 121
95 % 179 229 157
90 % 179 229 167
70 % 179 229 189
50 % 183 233 202
40 % 455 512 49
30 % 455 512 57
Entity #45 | Chains: U
50S ribosomal protein L24 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 228 122
95 % 179 228 159
90 % 179 228 168
70 % 179 228 191
50 % 433 488 48
40 % 433 488 68
30 % 433 490 70
Entity #46 | Chains: V
50S ribosomal protein L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 229 119
95 % 178 229 156
90 % 178 229 165
70 % 178 229 188
50 % 179 230 199
40 % 183 234 210
30 % 183 234 221
Entity #47 | Chains: W
50S ribosomal protein L27 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 224 130
95 % 179 225 167
90 % 179 225 176
70 % 212 258 163
50 % 462 512 39
40 % 462 512 48
30 % 462 512 56
Entity #48 | Chains: X
50S ribosomal protein L28 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 209 154
95 % 173 209 194
90 % 173 209 208
70 % 181 217 215
50 % 183 219 222
40 % 183 219 232
30 % 183 219 241
Entity #49 | Chains: Y
50S ribosomal protein L29 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 229 120
95 % 179 229 158
90 % 179 229 166
70 % 179 229 190
50 % 187 237 200
40 % 383 436 79
30 % 409 462 76
Entity #5 | Chains: f
30S ribosomal protein S6 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 84 430
95 % 66 86 539
90 % 66 86 565
70 % 66 86 591
50 % 70 90 592
40 % 70 90 641
30 % 70 90 659
Entity #50 | Chains: Z
50S ribosomal protein L30 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 226 126
95 % 179 226 162
90 % 179 226 170
70 % 179 226 194
50 % 244 293 161
40 % 451 505 54
30 % 451 505 61
Entity #51 | Chains: 0
50S ribosomal protein L32 protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 223 131
95 % 179 223 169
90 % 179 223 178
70 % 179 223 199
50 % 183 227 209
40 % 183 227 219
30 % 448 498 65
Entity #52 | Chains: 1
50S ribosomal protein L33 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 220 135
95 % 174 220 173
90 % 174 220 182
70 % 182 228 192
50 % 204 250 185
40 % 418 468 73
30 % 418 468 77
Entity #53 | Chains: 2
50S ribosomal protein L34 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 221 134
95 % 179 221 172
90 % 179 221 181
70 % 216 258 159
50 % 461 509 41
40 % 461 509 53
30 % 461 509 60
Entity #54 | Chains: 3
50S ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 218 138
95 % 176 218 175
90 % 176 218 185
70 % 176 218 209
50 % 210 253 184
40 % 211 254 200
30 % 211 254 211
Entity #55 | Chains: 4
50S ribosomal protein L36 protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 172 216 140
95 % 172 216 177
90 % 172 216 187
70 % 180 224 203
50 % 398 448 70
40 % 398 448 89
30 % 398 448 91
Entity #56 | Chains: 5
50S ribosomal protein L10 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 41 1220
95 % 35 47 1410
90 % 35 47 1455
70 % 35 47 1482
50 % 35 47 1533
40 % 35 47 1568
30 % 64 77 877
Entity #57 | Chains: 6
50S ribosomal protein L31 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 84 532
95 % 66 84 716
90 % 66 84 751
70 % 66 84 774
50 % 66 84 809
40 % 268 289 129
30 % 269 290 138
Entity #58 | Chains: 7
50S ribosomal protein L7/L12 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 23160
95 % 2 4 20679
90 % 2 4 25280
70 % 2 4 19975
50 % 2 4 20246
40 % 2 4 16342
30 % 2 4 14736
Entity #6 | Chains: h
30S ribosomal protein S8 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 212 142
95 % 171 212 179
90 % 171 212 189
70 % 171 212 218
50 % 179 220 215
40 % 540 594 28
30 % 723 808 22
Entity #7 | Chains: k
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 210 149
95 % 169 210 187
90 % 169 210 200
70 % 173 214 216
50 % 525 577 28
40 % 525 577 36
30 % 525 577 41
Entity #8 | Chains: l
30S ribosomal protein S12 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 139 184 171
95 % 167 212 184
90 % 167 212 196
70 % 519 581 16
50 % 537 600 21
40 % 537 600 27
30 % 537 600 33
Entity #9 | Chains: o
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 180 172
95 % 171 213 178
90 % 171 213 188
70 % 171 213 217
50 % 539 595 23
40 % 539 595 29
30 % 539 595 34

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5KCS 57 1w Tetracycline resistance protein TetM from transposon Tn916 1351
2 3J9Y 17 w Tetracycline resistance protein TetM 1351
3 4V6V 21 A1 Tetracycline resistance protein TetO 197
4 3J25 1 A Tetracycline resistance protein tetM 1351