3J9Y

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome


Sequence Similarity Clusters for the Entities in PDB 3J9Y

Entity #1 | Chains: a
16S ribosomal RNA rna, length: 1539 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: p
30S ribosomal protein S16 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 141 182 159
95 % 141 182 203
90 % 141 182 214
70 % 141 182 240
50 % 145 186 246
40 % 145 186 256
30 % 145 186 276
Entity #11 | Chains: q
30S ribosomal protein S17 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 140 181 151
95 % 140 181 193
90 % 140 181 204
70 % 144 185 220
50 % 158 203 212
40 % 158 203 223
30 % 158 203 237
Entity #12 | Chains: r
30S ribosomal protein S18 protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 127 230
95 % 109 131 293
90 % 109 131 307
70 % 111 133 345
50 % 111 133 409
40 % 111 133 429
30 % 111 133 450
Entity #13 | Chains: t
30S ribosomal protein S20 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 140 180 158
95 % 140 180 199
90 % 140 180 209
70 % 140 180 235
50 % 144 184 240
40 % 167 208 220
30 % 167 208 233
Entity #14 | Chains: u
30S ribosomal protein S21 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 126 231
95 % 108 126 308
90 % 108 126 321
70 % 110 128 357
50 % 110 128 425
40 % 110 128 442
30 % 110 128 465
Entity #15 | Chains: v
P-site fMet-tRNAfMet rna, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: x
mRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #17 | Chains: w
Tetracycline resistance protein TetM protein, length: 639 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 49848
95 % 2 3 27667
90 % 2 3 25536
70 % 2 4 20991
50 % 2 4 18817
40 % 2 4 15817
30 % 2 4 15555
Entity #18 | Chains: c
30S ribosomal protein S3 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 82 388
95 % 63 83 512
90 % 63 83 534
70 % 63 83 569
50 % 335 362 87
40 % 335 362 103
30 % 335 362 103
Entity #19 | Chains: g
30S ribosomal protein S7 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 71 447
95 % 139 178 214
90 % 139 178 223
70 % 51 71 660
50 % 51 71 692
40 % 51 71 716
30 % 51 71 764
Entity #2 | Chains: b
30S ribosomal protein S2 protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 138 177 161
95 % 138 177 208
90 % 138 177 219
70 % 142 181 232
50 % 487 537 31
40 % 492 543 38
30 % 492 543 41
Entity #20 | Chains: i
30S ribosomal protein S9 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 139 180 156
95 % 139 180 197
90 % 139 180 208
70 % 143 184 224
50 % 483 534 32
40 % 483 534 41
30 % 483 534 44
Entity #21 | Chains: j
30S ribosomal protein S10 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 143 183 147
95 % 144 184 187
90 % 148 188 195
70 % 148 188 215
50 % 496 545 26
40 % 496 545 35
30 % 527 578 34
Entity #22 | Chains: m
30S ribosomal protein S13 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 142 184 152
95 % 142 184 192
90 % 142 184 203
70 % 146 188 222
50 % 492 545 28
40 % 495 548 37
30 % 495 548 40
Entity #23 | Chains: n
30S ribosomal protein S14 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 26 2108
95 % 139 177 209
90 % 139 177 218
70 % 139 177 242
50 % 145 183 244
40 % 150 189 239
30 % 151 190 250
Entity #24 | Chains: s
30S ribosomal protein S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 138 178 160
95 % 138 178 206
90 % 138 178 216
70 % 144 184 227
50 % 494 546 25
40 % 494 546 34
30 % 494 546 38
Entity #25 | Chains: A
23S ribosomal RNA rna, length: 2903 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #26 | Chains: B
5S ribosomal RNA rna, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #27 | Chains: C
50S ribosomal protein L2 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 190 141
95 % 146 190 181
90 % 146 190 192
70 % 150 194 199
50 % 419 470 47
40 % 419 470 60
30 % 419 470 61
Entity #28 | Chains: D
50S ribosomal protein L3 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 155 202 123
95 % 155 202 158
90 % 155 202 173
70 % 159 206 183
50 % 423 476 48
40 % 427 480 55
30 % 427 481 57
Entity #29 | Chains: E
50S ribosomal protein L4 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 193 131
95 % 147 193 167
90 % 147 193 181
70 % 147 193 206
50 % 151 197 223
40 % 409 461 69
30 % 410 462 68
Entity #3 | Chains: d
30S ribosomal protein S4 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 141 181 153
95 % 141 181 195
90 % 141 181 206
70 % 145 185 223
50 % 472 521 34
40 % 500 551 33
30 % 500 551 37
Entity #30 | Chains: F
50S ribosomal protein L5 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 148 197 128
95 % 148 197 159
90 % 148 197 176
70 % 148 197 204
50 % 411 465 50
40 % 411 465 63
30 % 411 465 64
Entity #31 | Chains: G
50S ribosomal protein L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 192 134
95 % 146 192 174
90 % 146 192 187
70 % 146 192 209
50 % 184 238 185
40 % 414 471 57
30 % 414 471 58
Entity #32 | Chains: H
50S ribosomal protein L9 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 132 175 166
95 % 133 176 219
90 % 133 176 230
70 % 133 176 253
50 % 134 177 280
40 % 309 355 101
30 % 322 368 96
Entity #33 | Chains: I
50S ribosomal protein L11 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 166 168
95 % 116 166 223
90 % 116 166 234
70 % 120 170 259
50 % 189 266 154
40 % 189 266 170
30 % 191 274 169
Entity #34 | Chains: J
50S ribosomal protein L13 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 194 127
95 % 147 194 162
90 % 147 194 177
70 % 151 198 186
50 % 190 240 184
40 % 390 443 74
30 % 390 443 77
Entity #35 | Chains: K
50S ribosomal protein L14 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 195 122
95 % 147 195 157
90 % 147 195 172
70 % 151 199 184
50 % 424 483 40
40 % 424 483 50
30 % 424 483 51
Entity #36 | Chains: L
50S ribosomal protein L15 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 193 130
95 % 147 194 161
90 % 147 194 175
70 % 147 194 200
50 % 151 198 219
40 % 412 465 65
30 % 412 465 66
Entity #37 | Chains: M
50S ribosomal protein L16 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 132 178 164
95 % 144 190 180
90 % 144 190 191
70 % 148 194 202
50 % 416 468 49
40 % 416 468 61
30 % 416 468 62
Entity #38 | Chains: N
50S ribosomal protein L17 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 141 187 144
95 % 147 193 166
90 % 147 193 182
70 % 151 197 191
50 % 379 428 59
40 % 415 467 54
30 % 415 469 55
Entity #39 | Chains: O
50S ribosomal protein L18 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 145 191 135
95 % 145 191 176
90 % 145 191 188
70 % 145 191 212
50 % 399 450 57
40 % 399 450 76
30 % 399 450 78
Entity #4 | Chains: e
30S ribosomal protein S5 protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 141 169 165
95 % 141 182 191
90 % 141 182 202
70 % 145 186 217
50 % 488 541 29
40 % 488 541 39
30 % 488 541 42
Entity #40 | Chains: P
50S ribosomal protein L19 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 193 132
95 % 147 193 169
90 % 147 193 185
70 % 151 197 190
50 % 197 246 178
40 % 197 246 192
30 % 197 246 199
Entity #41 | Chains: Q
50S ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 194 125
95 % 147 194 164
90 % 147 194 179
70 % 151 198 185
50 % 417 470 45
40 % 424 478 52
30 % 424 478 53
Entity #42 | Chains: R
50S ribosomal protein L21 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 190 138
95 % 147 190 178
90 % 147 190 190
70 % 147 190 214
50 % 151 194 227
40 % 416 465 64
30 % 416 465 65
Entity #43 | Chains: S
50S ribosomal protein L22 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 193 133
95 % 147 193 168
90 % 147 193 183
70 % 147 193 207
50 % 385 439 58
40 % 385 439 77
30 % 385 439 79
Entity #44 | Chains: T
50S ribosomal protein L23 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 197 119
95 % 147 197 151
90 % 147 197 165
70 % 147 197 189
50 % 151 201 215
40 % 414 471 58
30 % 414 471 59
Entity #45 | Chains: U
50S ribosomal protein L24 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 196 121
95 % 147 196 156
90 % 147 196 170
70 % 147 196 196
50 % 388 443 55
40 % 388 443 75
30 % 388 445 76
Entity #46 | Chains: V
50S ribosomal protein L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 197 118
95 % 146 197 152
90 % 146 197 166
70 % 146 197 192
50 % 147 198 211
40 % 147 198 222
30 % 147 198 236
Entity #47 | Chains: W
50S ribosomal protein L27 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 192 137
95 % 147 193 172
90 % 147 193 186
70 % 176 222 173
50 % 417 467 46
40 % 417 467 59
30 % 417 467 60
Entity #48 | Chains: X
50S ribosomal protein L28 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 141 177 163
95 % 141 177 215
90 % 141 177 225
70 % 145 181 241
50 % 147 183 249
40 % 147 183 263
30 % 147 183 286
Entity #49 | Chains: Y
50S ribosomal protein L29 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 197 120
95 % 147 197 153
90 % 147 197 167
70 % 147 197 193
50 % 151 201 216
40 % 343 396 88
30 % 369 422 84
Entity #5 | Chains: f
30S ribosomal protein S6 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 81 395
95 % 63 83 511
90 % 63 83 535
70 % 63 83 568
50 % 63 83 606
40 % 63 83 637
30 % 63 83 668
Entity #50 | Chains: Z
50S ribosomal protein L30 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 194 124
95 % 147 194 163
90 % 147 194 178
70 % 147 194 201
50 % 203 252 175
40 % 406 460 67
30 % 406 460 70
Entity #51 | Chains: 0
50S ribosomal protein L32 protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 191 136
95 % 147 191 175
90 % 147 191 189
70 % 147 191 213
50 % 151 195 226
40 % 151 195 233
30 % 407 457 73
Entity #52 | Chains: 1
50S ribosomal protein L33 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 144 190 139
95 % 144 190 179
90 % 144 190 193
70 % 148 194 203
50 % 173 219 196
40 % 376 426 82
30 % 376 426 86
Entity #53 | Chains: 2
50S ribosomal protein L34 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 189 142
95 % 147 189 183
90 % 147 189 194
70 % 180 222 172
50 % 416 464 52
40 % 416 464 66
30 % 416 464 67
Entity #54 | Chains: 3
50S ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 144 186 146
95 % 144 186 185
90 % 144 186 198
70 % 144 186 218
50 % 169 212 204
40 % 406 452 72
30 % 406 452 74
Entity #55 | Chains: 4
50S ribosomal protein L36 protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 140 184 148
95 % 140 184 189
90 % 140 184 200
70 % 144 188 216
50 % 354 404 79
40 % 354 404 97
30 % 354 404 95
Entity #56 | Chains: 5
50S ribosomal protein L10 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 40 1143
95 % 33 45 1386
90 % 33 45 1425
70 % 33 45 1467
50 % 33 45 1489
40 % 33 45 1515
30 % 62 75 840
Entity #57 | Chains: 6
50S ribosomal protein L31 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 80 506
95 % 62 80 682
90 % 62 80 717
70 % 62 80 759
50 % 62 80 791
40 % 260 281 131
30 % 261 282 138
Entity #58 | Chains: 7
50S ribosomal protein L7/L12 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 24799
95 % 2 4 25080
90 % 2 4 24286
70 % 2 4 22156
50 % 2 4 19554
40 % 2 4 17947
30 % 2 4 16112
Entity #6 | Chains: h
30S ribosomal protein S8 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 141 182 149
95 % 141 182 188
90 % 141 182 199
70 % 141 182 229
50 % 497 550 24
40 % 502 556 31
30 % 667 752 23
Entity #7 | Chains: k
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 139 180 155
95 % 139 180 201
90 % 139 180 211
70 % 139 180 236
50 % 487 539 30
40 % 487 539 40
30 % 487 539 43
Entity #8 | Chains: l
30S ribosomal protein S12 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 154 184
95 % 137 182 194
90 % 137 182 205
70 % 481 543 17
50 % 498 561 22
40 % 498 561 29
30 % 498 561 35
Entity #9 | Chains: o
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 126 150 190
95 % 141 183 190
90 % 141 183 201
70 % 141 183 230
50 % 501 557 23
40 % 501 557 32
30 % 501 557 36

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4WOI 7 AG, DG 30S ribosomal protein S7 562
2 4V9P 39 BG, DG, FG, HG 30S ribosomal protein S7 562
3 4V9O 40 BG, DG, FG, HG 30S ribosomal protein S7 562
4 4V6C 6 AG, CG 30S ribosomal protein S7 562
5 4V9C 7 AG, CG 30S ribosomal protein S7 562
6 4V6D 6 AG, CG 30S ribosomal protein S7 562
7 4V6E 6 AG, CG 30S ribosomal protein S7 562
8 4V52 6 AG, CG 30S ribosomal protein S7 562
9 4V89 7 AG 30S ribosomal protein S7 562
10 4V54 6 AG, CG 30S ribosomal protein S7 562
11 4V50 9 AG, CG 30S ribosomal protein S7 562
12 4V57 6 AG, CG 30S ribosomal protein S7 562
13 4V64 6 AG, CG 30S ribosomal protein S7 562
14 4V4H 6 AG, CG 30S RIBOSOMAL PROTEIN S7 562
15 4V4Q 6 AG, CG 30S ribosomal protein S7 562
16 4V5B 39 BG, DG 30S RIBOSOMAL PROTEIN S7 RESIDUES 2-156 562
17 6BY1 42 AG, BG 30S ribosomal protein S7 562
18 4V53 6 AG, CG 30S ribosomal protein S7 562
19 4V56 6 AG, CG 30S ribosomal protein S7 562
20 4V55 6 AG, CG 30S ribosomal protein S7 562
21 4V5Y 6 AG, CG 30S ribosomal protein S7 562
22 6TC3 7 S071 30S ribosomal protein S7 562
23 6TBV 7 S071 30S ribosomal protein S7 562
24 6SZS 38 g 30S ribosomal protein S7 562
25 6Q98 42 l 30S ribosomal protein S7 562
26 6C4I 40 g 30S ribosomal protein S7 562
27 5UZ4 6 G 30S ribosomal protein S7 562
28 5MY1 6 G 30S ribosomal protein S7 562
29 5U4I 38 g 30S ribosomal protein S7 Gene Name(s): rpsG b3341 JW3303 562
30 5MDV 44 l 30S ribosomal protein S7 562
31 5MDW 44 l 30S ribosomal protein S7 562
32 5MDY 44 l 30S ribosomal protein S7 562
33 5MDZ 42 l 30S ribosomal protein S7 562
34 5H5U 45 n 30S ribosomal protein S7 562
35 5KPS 38 12 30S ribosomal protein S7 562
36 5KPV 37 11 30S ribosomal protein S7 562
37 5KPW 37 11 30S ribosomal protein S7 562
38 5KPX 37 11 30S ribosomal protein S7 562
39 5KCR 39 1g 30S ribosomal protein S7 562
40 5KCS 41 1g 30S ribosomal protein S7 562
41 5L3P 38 g 30S ribosomal protein S7 562
42 5JU8 7 AG 30S ribosomal protein S7 562
43 5JTE 7 AG 30S ribosomal protein S7 562
44 5IQR 37 l 30S ribosomal protein S7 562
45 3JCN 38 h 30S ribosomal protein S7 562
46 3JCJ 43 m 30S ribosomal protein S7 562
47 3JCD 6 g 30S ribosomal protein S7 562
48 3JCE 6 g 30S ribosomal protein S7 562
49 3JA1 7 SG 30S ribosomal protein S7 562
50 3J9Z 21 SG 30S ribosomal protein S7 562
51 3J9Y 19 g 30S ribosomal protein S7 562
52 5AFI 7 g 30S ribosomal protein S7 562
53 4V7D 41 BG 30S ribosomal protein S7 562
54 4V7C 7 AG 30S ribosomal protein S7 562
55 4V7B 7 AG 30S ribosomal protein S7 562
56 4V6V 18 AG 30S ribosomal protein S7 562
57 4ADV 7 G 30S RIBOSOMAL PROTEIN S7 562
58 4V6S 43 BI 30S ribosomal protein S7 562
59 4V6P 10 AJ 30S ribosomal protein S7 562
60 4V6Q 10 AJ 30S ribosomal protein S7 562
61 4V6R 10 AJ 30S ribosomal protein S7 562
62 4V6N 44 BJ 30S ribosomal protein S7 562
63 4V6O 10 AJ 30S ribosomal protein S7 562
64 4V6M 11 AG 30S ribosomal protein S7 562
65 4V6K 43 BK 30S ribosomal protein S7 562
66 4V6L 10 AK 30S ribosomal protein S7 562
67 4V7I 42 BG 30S ribosomal protein S7 562
68 4V65 20 AU 30S ribosomal protein S7 562
69 4V66 20 AU 30S ribosomal protein S7 562
70 4V47 33 BG 30S RIBOSOMAL PROTEIN S7 562
71 4V48 35 BG 30S RIBOSOMAL PROTEIN S7 562