3J9Y

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome


Sequence Similarity Clusters for the Entities in PDB 3J9Y

Entity #1 | Chains: a
16S ribosomal RNA rna, length: 1539 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: p
30S ribosomal protein S16 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 202 153
95 % 161 202 198
90 % 161 202 212
70 % 161 202 231
50 % 165 206 235
40 % 165 206 246
30 % 165 206 259
Entity #11 | Chains: q
30S ribosomal protein S17 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 201 144
95 % 160 201 188
90 % 160 201 201
70 % 164 205 215
50 % 182 227 206
40 % 182 227 219
30 % 182 227 230
Entity #12 | Chains: r
30S ribosomal protein S18 protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 126 146 216
95 % 128 150 279
90 % 128 150 290
70 % 134 156 320
50 % 134 156 377
40 % 134 156 400
30 % 134 156 412
Entity #13 | Chains: t
30S ribosomal protein S20 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 200 150
95 % 160 200 196
90 % 160 200 210
70 % 160 200 230
50 % 168 208 226
40 % 168 208 236
30 % 191 232 226
Entity #14 | Chains: u
30S ribosomal protein S21 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 127 145 219
95 % 127 145 287
90 % 127 145 299
70 % 132 150 329
50 % 132 150 384
40 % 132 150 411
30 % 132 150 426
Entity #15 | Chains: v
P-site fMet-tRNAfMet rna, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: x
mRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #17 | Chains: w
Tetracycline resistance protein TetM protein, length: 639 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 42634
95 % 2 3 28172
90 % 2 3 27179
70 % 2 4 19301
50 % 2 4 17198
40 % 2 4 15868
30 % 2 4 14379
Entity #18 | Chains: c
30S ribosomal protein S3 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 85 420
95 % 66 86 534
90 % 66 86 559
70 % 66 86 587
50 % 346 373 86
40 % 346 373 104
30 % 346 373 106
Entity #19 | Chains: g
30S ribosomal protein S7 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 74 470
95 % 159 198 207
90 % 159 198 221
70 % 54 74 685
50 % 54 74 720
40 % 54 74 749
30 % 54 74 784
Entity #2 | Chains: b
30S ribosomal protein S2 protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 197 156
95 % 158 197 203
90 % 158 197 216
70 % 166 205 218
50 % 515 565 29
40 % 520 571 34
30 % 520 571 39
Entity #20 | Chains: i
30S ribosomal protein S9 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 159 200 151
95 % 159 200 197
90 % 159 200 211
70 % 167 208 211
50 % 511 562 30
40 % 511 562 37
30 % 511 562 42
Entity #21 | Chains: j
30S ribosomal protein S10 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 163 203 142
95 % 164 204 181
90 % 168 208 188
70 % 172 212 205
50 % 524 573 25
40 % 524 573 32
30 % 560 611 30
Entity #22 | Chains: m
30S ribosomal protein S13 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 162 204 145
95 % 162 204 191
90 % 162 204 204
70 % 170 212 209
50 % 520 573 26
40 % 523 576 33
30 % 523 576 38
Entity #23 | Chains: n
30S ribosomal protein S14 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 27 2055
95 % 159 197 201
90 % 159 197 215
70 % 159 197 233
50 % 169 207 227
40 % 174 213 232
30 % 175 214 245
Entity #24 | Chains: s
30S ribosomal protein S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 200 148
95 % 160 200 194
90 % 160 200 207
70 % 168 208 212
50 % 522 574 24
40 % 522 574 31
30 % 522 574 37
Entity #25 | Chains: A
23S ribosomal RNA rna, length: 2903 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #26 | Chains: B
5S ribosomal RNA rna, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #27 | Chains: C
50S ribosomal protein L2 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 222 117
95 % 178 222 155
90 % 178 222 163
70 % 186 230 180
50 % 464 515 36
40 % 464 515 44
30 % 465 516 49
Entity #28 | Chains: D
50S ribosomal protein L3 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 187 234 113
95 % 187 234 151
90 % 187 234 159
70 % 195 242 175
50 % 468 521 38
40 % 472 525 42
30 % 472 526 45
Entity #29 | Chains: E
50S ribosomal protein L4 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 225 115
95 % 179 225 154
90 % 179 225 162
70 % 183 229 182
50 % 187 233 202
40 % 454 506 49
30 % 455 507 54
Entity #3 | Chains: d
30S ribosomal protein S4 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 200 152
95 % 161 201 189
90 % 161 201 202
70 % 169 209 210
50 % 500 549 32
40 % 528 579 30
30 % 528 579 36
Entity #30 | Chains: F
50S ribosomal protein L5 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 219 127
95 % 170 219 161
90 % 170 219 170
70 % 170 219 198
50 % 441 495 44
40 % 441 495 55
30 % 441 495 61
Entity #31 | Chains: G
50S ribosomal protein L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 168 214 130
95 % 168 214 167
90 % 168 214 176
70 % 168 214 201
50 % 176 222 213
40 % 221 275 185
30 % 448 506 55
Entity #32 | Chains: H
50S ribosomal protein L9 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 152 195 165
95 % 153 196 215
90 % 153 196 227
70 % 153 196 247
50 % 158 201 249
40 % 337 383 100
30 % 350 396 96
Entity #33 | Chains: I
50S ribosomal protein L11 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 134 184 168
95 % 134 184 223
90 % 134 184 230
70 % 138 188 249
50 % 207 284 148
40 % 209 288 164
30 % 209 289 173
Entity #34 | Chains: J
50S ribosomal protein L13 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 226 114
95 % 179 226 153
90 % 179 226 160
70 % 187 234 177
50 % 231 281 169
40 % 435 488 64
30 % 435 488 67
Entity #35 | Chains: K
50S ribosomal protein L14 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 217 124
95 % 169 217 160
90 % 169 217 168
70 % 177 225 184
50 % 459 518 35
40 % 459 518 41
30 % 459 518 46
Entity #36 | Chains: L
50S ribosomal protein L15 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 225 116
95 % 179 226 152
90 % 179 226 161
70 % 179 226 183
50 % 187 234 201
40 % 457 510 46
30 % 457 510 52
Entity #37 | Chains: M
50S ribosomal protein L16 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 152 198 162
95 % 164 210 176
90 % 164 210 187
70 % 172 218 194
50 % 449 501 42
40 % 449 501 52
30 % 449 501 58
Entity #38 | Chains: N
50S ribosomal protein L17 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 163 209 138
95 % 169 215 166
90 % 169 215 174
70 % 177 223 187
50 % 409 458 56
40 % 450 502 47
30 % 450 504 51
Entity #39 | Chains: O
50S ribosomal protein L18 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 213 133
95 % 167 213 170
90 % 167 213 179
70 % 167 213 203
50 % 434 485 54
40 % 418 466 72
30 % 418 466 76
Entity #4 | Chains: e
30S ribosomal protein S5 protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 189 163
95 % 161 202 187
90 % 161 202 200
70 % 169 210 208
50 % 516 569 27
40 % 516 569 35
30 % 516 569 40
Entity #40 | Chains: P
50S ribosomal protein L19 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 215 129
95 % 169 215 164
90 % 169 215 173
70 % 169 215 200
50 % 226 275 172
40 % 226 275 182
30 % 226 275 192
Entity #41 | Chains: Q
50S ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 216 125
95 % 169 216 163
90 % 169 216 171
70 % 177 224 185
50 % 452 505 39
40 % 459 513 43
30 % 459 513 48
Entity #42 | Chains: R
50S ribosomal protein L21 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 212 134
95 % 169 212 171
90 % 169 212 180
70 % 169 212 206
50 % 177 220 214
40 % 451 500 53
30 % 451 500 59
Entity #43 | Chains: S
50S ribosomal protein L22 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 215 128
95 % 169 215 165
90 % 169 215 175
70 % 177 223 188
50 % 420 474 55
40 % 420 474 71
30 % 420 474 74
Entity #44 | Chains: T
50S ribosomal protein L23 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 219 120
95 % 169 219 156
90 % 169 219 166
70 % 169 219 191
50 % 173 223 211
40 % 445 502 51
30 % 445 502 57
Entity #45 | Chains: U
50S ribosomal protein L24 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 218 123
95 % 169 218 159
90 % 169 218 167
70 % 169 218 197
50 % 221 273 173
40 % 423 478 69
30 % 423 480 72
Entity #46 | Chains: V
50S ribosomal protein L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 168 219 121
95 % 168 219 157
90 % 168 219 165
70 % 168 219 192
50 % 169 220 207
40 % 173 224 215
30 % 173 224 227
Entity #47 | Chains: W
50S ribosomal protein L27 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 168 214 132
95 % 169 215 168
90 % 169 215 177
70 % 202 248 165
50 % 452 502 41
40 % 452 502 50
30 % 452 502 56
Entity #48 | Chains: X
50S ribosomal protein L28 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 163 199 157
95 % 163 199 205
90 % 163 199 219
70 % 171 207 220
50 % 173 209 228
40 % 173 209 239
30 % 173 209 252
Entity #49 | Chains: Y
50S ribosomal protein L29 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 219 119
95 % 169 219 158
90 % 169 219 164
70 % 169 219 193
50 % 177 227 209
40 % 373 426 82
30 % 399 452 80
Entity #5 | Chains: f
30S ribosomal protein S6 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 84 427
95 % 66 86 540
90 % 66 86 557
70 % 66 86 590
50 % 70 90 592
40 % 70 90 636
30 % 70 90 652
Entity #50 | Chains: Z
50S ribosomal protein L30 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 216 126
95 % 169 216 162
90 % 169 216 172
70 % 169 216 199
50 % 234 283 164
40 % 441 495 56
30 % 441 495 63
Entity #51 | Chains: 0
50S ribosomal protein L32 protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 213 131
95 % 169 213 169
90 % 169 213 178
70 % 169 213 204
50 % 173 217 218
40 % 173 217 226
30 % 438 488 69
Entity #52 | Chains: 1
50S ribosomal protein L33 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 164 210 137
95 % 164 210 174
90 % 164 210 185
70 % 172 218 195
50 % 194 240 192
40 % 408 458 76
30 % 408 458 82
Entity #53 | Chains: 2
50S ribosomal protein L34 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 211 135
95 % 169 211 172
90 % 169 211 183
70 % 206 248 164
50 % 451 499 43
40 % 451 499 54
30 % 451 499 60
Entity #54 | Chains: 3
50S ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 166 208 139
95 % 166 208 177
90 % 166 208 190
70 % 166 208 213
50 % 200 243 191
40 % 201 244 204
30 % 201 244 218
Entity #55 | Chains: 4
50S ribosomal protein L36 protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 162 206 141
95 % 162 206 178
90 % 162 206 192
70 % 170 214 202
50 % 388 438 73
40 % 388 438 92
30 % 388 438 93
Entity #56 | Chains: 5
50S ribosomal protein L10 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 41 1189
95 % 35 47 1395
90 % 35 47 1435
70 % 35 47 1465
50 % 35 47 1507
40 % 35 47 1551
30 % 64 77 863
Entity #57 | Chains: 6
50S ribosomal protein L31 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 84 529
95 % 66 84 717
90 % 66 84 747
70 % 66 84 767
50 % 66 84 797
40 % 268 289 130
30 % 269 290 138
Entity #58 | Chains: 7
50S ribosomal protein L7/L12 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22967
95 % 2 4 22147
90 % 2 4 21541
70 % 2 4 19881
50 % 2 4 17650
40 % 2 4 16269
30 % 2 4 14707
Entity #6 | Chains: h
30S ribosomal protein S8 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 202 143
95 % 161 202 185
90 % 161 202 198
70 % 161 202 223
50 % 169 210 222
40 % 530 584 28
30 % 530 584 33
Entity #7 | Chains: k
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 159 200 149
95 % 159 200 195
90 % 159 200 209
70 % 163 204 219
50 % 515 567 28
40 % 515 567 36
30 % 515 567 41
Entity #8 | Chains: l
30S ribosomal protein S12 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 129 174 175
95 % 157 202 190
90 % 157 202 203
70 % 509 571 16
50 % 527 590 22
40 % 527 590 27
30 % 527 590 32
Entity #9 | Chains: o
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 170 177
95 % 161 203 183
90 % 161 203 197
70 % 161 203 222
50 % 529 585 23
40 % 529 585 29
30 % 529 585 34

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9P 32 A5, E5 50S ribosomal protein L10 562
2 4V9O 32 A5, C5, E5 50S ribosomal protein L10 562
3 6LKQ 49 n 50S ribosomal protein L10 562
4 4V85 41 BH 50S ribosomal protein L10 562
5 4V89 40 BH 50S ribosomal protein L10 562
6 7BV8 9 I 50S ribosomal protein L10 562
7 6S0K 10 I 50S ribosomal protein L10 562
8 6Q98 12 H 50S ribosomal protein L10 562
9 6I0Y 7 5 50S ribosomal protein L10 562
10 6DNC 12 L 50S ribosomal protein L10 562
11 6C4I 9 I 50S ribosomal protein L10 562
12 5U9F 13 10 50S ribosomal protein L10 562
13 5U9G 13 10 50S ribosomal protein L10 562
14 5MDV 14 H 50S ribosomal protein L10 562
15 5MDW 14 H 50S ribosomal protein L10 562
16 5MDY 14 H 50S ribosomal protein L10 562
17 5MDZ 12 H 50S ribosomal protein L10 562
18 5H5U 15 I 50S ribosomal protein L10 562
19 5KPS 8 H 50S ribosomal protein L10 562
20 5KPV 7 G 50S ribosomal protein L10 562
21 5KPW 7 G 50S ribosomal protein L10 562
22 5KPX 7 G 50S ribosomal protein L10 562
23 5KCR 9 1J 50S ribosomal protein L10 562
24 5KCS 10 1J 50S ribosomal protein L10 562
25 5L3P 53 J 50S ribosomal protein L10 562
26 5IQR 7 H 50S ribosomal protein L10 562
27 3JCJ 36 e 50S ribosomal protein L10 562
28 5GAG 11 I 50S ribosomal protein L10 562
29 5GAH 11 I 50S ribosomal protein L10 562
30 5GAE 9 I 50S ribosomal protein L10 562
31 5GAD 11 I 50S ribosomal protein L10 562
32 5ADY 8 7 50S RIBOSOMAL PROTEIN L10 562
33 3JA1 47 LJ 50S ribosomal protein L10 562
34 3J9Z 38 LD 50S ribosomal protein L10 562
35 3J9Y 56 5 50S ribosomal protein L10 562
36 5AFI 57 5 50S ribosomal protein L10 562
37 3J7Z 6 5 50S ribosomal protein L10 562
38 4V7D 10 AJ 50S ribosomal protein L10 562
39 4V7C 34 BJ 50S ribosomal protein L10 562
40 4V7B 57 B5 50S ribosomal protein L10 562
41 4V6V 26 BJ 50S ribosomal protein L10 562
42 4V6S 10 AJ 50S ribosomal protein L10 2285
43 4V6P 34 BJ 50S ribosomal protein L10 2285
44 4V6Q 34 BJ 50S ribosomal protein L10 2285
45 4V6R 34 BJ 50S ribosomal protein L10 2285
46 4V6N 10 AJ 50S ribosomal protein L10 2285
47 4V6O 34 BJ 50S ribosomal protein L10 2285