3JAK

Cryo-EM structure of GTPgammaS-microtubule co-polymerized with EB3 (merged dataset with and without kinesin bound)


Sequence Similarity Clusters for the Entities in PDB 3JAK

Entity #1 | Chains: A,C,E,J,K,L
Tubulin alpha-1B chain protein, length: 451 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 174 42
95 % 232 272 13
90 % 235 275 16
70 % 251 291 14
50 % 251 291 18
40 % 502 582 3
30 % 513 593 7
Entity #2 | Chains: B,D,F,G,H,I
Tubulin beta chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 79 116 56
95 % 231 270 14
90 % 244 283 8
70 % 252 291 13
50 % 252 291 17
40 % 503 582 3
30 % 514 593 7
Entity #3 | Chains: M,N
Microtubule-associated protein RP/EB family member 3 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 16611
95 % 2 3 15794
90 % 2 3 15535
70 % 2 3 14832
50 % 2 3 13214
40 % 2 3 12320
30 % 2 3 11441

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures