Sequence Similarity Clusters for the Entities in PDB 3JAK

Entity #1 | Chains: A,C,E,J,K,L
Tubulin alpha-1B chain protein, length: 451 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 151 154 44
95 % 206 246 12
90 % 207 247 15
70 % 217 257 21
50 % 217 257 42
40 % 434 514 8
30 % 442 522 11
Entity #2 | Chains: B,D,F,G,H,I
Tubulin beta chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 85 73
95 % 204 243 14
90 % 211 250 14
70 % 218 257 20
50 % 218 257 41
40 % 435 514 8
30 % 443 522 11
Entity #3 | Chains: M,N
Microtubule-associated protein RP/EB family member 3 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 13399
95 % 2 3 14830
90 % 2 3 14389
70 % 2 3 13565
50 % 2 3 12358
40 % 2 3 11535
30 % 2 3 9821

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures