Sequence Similarity Clusters for the Entities in PDB 3JAK

Entity #1 | Chains: A,C,E,J,K,L
Tubulin alpha-1B chain protein, length: 451 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 155 158 42
95 % 210 250 12
90 % 211 251 15
70 % 226 266 13
50 % 226 266 17
40 % 452 532 4
30 % 460 540 8
Entity #2 | Chains: B,D,F,G,H,I
Tubulin beta chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 85 75
95 % 208 247 13
90 % 219 258 8
70 % 227 266 12
50 % 227 266 16
40 % 453 532 4
30 % 461 540 8
Entity #3 | Chains: M,N
Microtubule-associated protein RP/EB family member 3 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 14617
95 % 2 3 14932
90 % 2 3 14694
70 % 2 3 12640
50 % 2 3 12582
40 % 2 3 10866
30 % 2 3 10774

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures