Sequence Similarity Clusters for the Entities in PDB 3JAK

Entity #1 | Chains: A,C,E,J,K,L
Tubulin alpha-1B chain protein, length: 451 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 162 165 42
95 % 217 257 13
90 % 218 258 15
70 % 233 273 13
50 % 233 273 18
40 % 466 546 4
30 % 477 557 8
Entity #2 | Chains: B,D,F,G,H,I
Tubulin beta chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 85 77
95 % 214 253 14
90 % 226 265 8
70 % 234 273 12
50 % 234 273 17
40 % 467 546 4
30 % 478 557 8
Entity #3 | Chains: M,N
Microtubule-associated protein RP/EB family member 3 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 14885
95 % 2 3 15483
90 % 2 3 15207
70 % 2 3 14286
50 % 2 3 12997
40 % 2 3 12127
30 % 2 3 11109

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures