Sequence Similarity Clusters for the Entities in PDB 3JAL

Entity #1 | Chains: A,C,E,J,K,L
Tubulin alpha-1B chain protein, length: 451 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 162 164 42
95 % 217 256 13
90 % 218 257 15
70 % 233 272 13
50 % 233 272 18
40 % 466 544 4
30 % 477 555 8
Entity #2 | Chains: B,D,F,G,H,I
Tubulin beta chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 68 104 56
95 % 214 252 14
90 % 226 264 8
70 % 234 272 12
50 % 234 272 17
40 % 467 544 4
30 % 478 555 8
Entity #3 | Chains: M,N
Microtubule-associated protein RP/EB family member 3 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 14215
95 % 3 3 14436
90 % 3 3 14219
70 % 3 3 13415
50 % 3 3 12229
40 % 3 3 11457
30 % 3 3 10552

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures